1 5' 3' | 2 5' 3' | 3 5' 3' |
...cttgaatctctacctatcgtccacatgcgtggcacttcgtatccagcagtgaaagtgcctagttcaacttgcggctaagaggtgtttgttgtggcatcagGTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCTGAGATTCCTTCAAGCTTGGACATAATGGGGCAGAAGATCGACTTTTCCG
species | Physcomitrella patens |
transcript | PP1S83_99V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCAAAACGTATTCAG GTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCTEST: gi|162193268|gb|FC371536.1|FC371536
genomic: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCAAAACGTATTCAGgtaacagacc ... gtggcatcagGTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCT
EST: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCANAACGTATTCAG GTAAAATTTGAGGAGGGGAGCATATCCGCCCCGAAGGTTTCAAACTCCGCTEST: gi|162170236|gb|FC347356.1|FC347356
genomic: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCAAAACGTATTCAGgtaacagacc ... gtggcatcagGTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCT
EST: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCAAAACGTTTTCAG GTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCTEST: gi|162201612|gb|FC378274.1|FC378274
genomic: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCAAAACGTATTCAGgtaacagacc ... gtggcatcagGTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCT
EST: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCAAAACGTATTCAG GTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCTEST: gi|162195612|gb|FC371913.1|FC371913
genomic: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCAAAACGTATTCAGgtaacagacc ... gtggcatcagGTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCT
EST: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCAAAACGTATTCAG GTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCTEST: gi|19783876|gb|BQ040084.1|BQ040084
genomic: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCAAAACGTATTCAGgtaacagacc ... gtggcatcagGTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCT
EST: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCAAAACGTATTCAG GTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCTEST: gi|162170235|gb|FC347355.1|FC347355
genomic: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCAAAACGTATTCAGgtaacagacc ... gtggcatcagGTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCT
EST: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCAAAACGTTTTCAG GTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCTEST: gi|162164657|gb|FC340704.1|FC340704
genomic: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCAAAACGTATTCAGgtaacagacc ... gtggcatcagGTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCT
EST: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCAAAACGTATTCAG GTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCTEST: gi|162164658|gb|FC340705.1|FC340705
genomic: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCAAAACGTATTCAGgtaacagacc ... gtggcatcagGTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCT
EST: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCAAAACGTATTCAG GTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCTEST: gi|162216999|gb|FC392272.1|FC392272
genomic: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCAAAACGTATTCAGgtaacagacc ... gtggcatcagGTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCT
EST: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCAAAACGTATTCAG GTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCTEST: gi|162216998|gb|FC392271.1|FC392271
genomic: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCAAAACGTATTCAGgtaacagacc ... gtggcatcagGTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCT
EST: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCAAAACGTATTCAG GTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCTEST: gi|208353435|gb|DC922489.1|DC922489
genomic: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCAAAACGTATTCAGgtaacagacc ... gtggcatcagGTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCT
EST: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCAAAACGTATTCAG GTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCT
genomic: CTTTTAGTGCTTCTGCTTCGTTCGAAATTCGCAGCCCAAAACGTATTCAGgtaacagacc ... gtggcatcagGTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgaatctctacctatcgtccacatgcgtggcacttcgtatccagcagtgaaagtgcctagttcaacttgcggctaagaggtgtttgttgtggcatcagGTAAAATTTGAGGAGGGAAGCATATCCGCCCCGAAGGTTTCAAACTCCGCTGAGATTCCTTCAAGCTTGGACATAATGGGGCAGAAGATCGACTTTTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - -cacatgc