1 5' 3' | 2 5' 3' | 3 5' 3' |
GTGCCGAGGTTATTGAGCTTATAACGCAGTTGGAGGCGAAGAATCCCACAGAAGCTCCCACAGCAGCTCTCACTCTCCTGAATGGAAAGTGGGTTTTGGCgtacgtattccatccttttctgcacaatgaaaactgaaagaaacatttaactactgttgtttatgcttgtatacacaatttaaaagaatcagggaaattt...
species | Physcomitrella patens |
transcript | PP1S83_99V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GAAGCTCCCACAGCAGCTCTCACTCTCCTGAATGGAAAGTGGGTTTTGGC GTACACGTCGTTCTCTGAGTTGTTTCCGTTGTTGGCTGCTGGAAATCTACCEST: gi|100352765|gb|BY945437.1|BY945437
genomic: GAAGCTCCCACAGCAGCTCTCACTCTCCTGAATGGAAAGTGGGTTTTGGCgtacgtattc ... ggtgtaacagGTACACGTCGTTCTCTGAGTTGTTTCCGTTGTTGGCTGCTGGAAATCTACC
EST: GAAGCTCCCACAGCAGCTCTCACTCTCCTGAATGGAAAGTGGGTTTTGGC GTACACGTCGTTCTCTGAGTTGTTTCCGNTTGT-GGCTGCTGGAAATCTACEST: gi|162170236|gb|FC347356.1|FC347356
genomic: GAAGCTCCCACAGCAGCTCTCACTCTCCTGAATGGAAAGTGGGTTTTGGCgtacgtattc ... ggtgtaacagGTACACGTCGTTCTCTGAGTTGTTTCCG-TTGTTGGCTGCTGGAAATCTAC
EST: GAAGCTCCCACAGCAGCTCTCACTCTCCTGAATGGAAAGTGGGTTTTGGC GTACACGTCGTTCTCTGAGTTGTTTCCGTTGTTGGCTGCTGGAAATCTACCEST: gi|162201612|gb|FC378274.1|FC378274
genomic: GAAGCTCCCACAGCAGCTCTCACTCTCCTGAATGGAAAGTGGGTTTTGGCgtacgtattc ... ggtgtaacagGTACACGTCGTTCTCTGAGTTGTTTCCGTTGTTGGCTGCTGGAAATCTACC
EST: GAAGCTCCCACAGCAGCTCTCACTCTCCTGAATGGAAAGTGGGTTTTGGC GTACACGTCGTTCTCTGAGTTGTTTCCGTTGTTGGCTGCTGGAAATCTACCEST: gi|162195613|gb|FC371914.1|FC371914
genomic: GAAGCTCCCACAGCAGCTCTCACTCTCCTGAATGGAAAGTGGGTTTTGGCgtacgtattc ... ggtgtaacagGTACACGTCGTTCTCTGAGTTGTTTCCGTTGTTGGCTGCTGGAAATCTACC
EST: GAAGCTCCCACAGCAGCTCTCACTCTCCTGAATGGAAAGTGGGTTTTGGC GTACACGTCGTTCTCTGAGTTGGTTTC-GTTGTTGGCTGCTGGEST: gi|19783876|gb|BQ040084.1|BQ040084
genomic: GAAGCTCCCACAGCAGCTCTCACTCTCCTGAATGGAAAGTGGGTTTTGGCgtacgtattc ... ggtgtaacagGTACACGTCGTTCTCTGAGTTG-TTTCCGTTGTTGGCTGCTGG
EST: CTCCTGAATGGAAAGTGGGTTTTGGC GTACACGTCGTTCTCTGAGTTGTTTCCGTTGTTGGCTGCTGGAAATCTACCEST: gi|162164658|gb|FC340705.1|FC340705
genomic: CTCCTGAATGGAAAGTGGGTTTTGGCgtacgtattc ... ggtgtaacagGTACACGTCGTTCTCTGAGTTGTTTCCGTTGTTGGCTGCTGGAAATCTACC
EST: GAAGCTCCCACAGCAGCTCTCACTCTCCTGAATGGAAAGTGGGTTTTGGC GTACACGTCGTTCTCTGAGTTGTTTCCGTTGTTGGCTGCTGGAAATCTACCEST: gi|162216999|gb|FC392272.1|FC392272
genomic: GAAGCTCCCACAGCAGCTCTCACTCTCCTGAATGGAAAGTGGGTTTTGGCgtacgtattc ... ggtgtaacagGTACACGTCGTTCTCTGAGTTGTTTCCGTTGTTGGCTGCTGGAAATCTACC
EST: GAAGCTCCCACAGCAGCTCTCACTCTCCTGAATGGAAAGTGGGTTTTGGC GTACACGTCGTTCTCTGAGTTGTTTCCGTTGTTGGCTGCTGGAAATCTACC
genomic: GAAGCTCCCACAGCAGCTCTCACTCTCCTGAATGGAAAGTGGGTTTTGGCgtacgtattc ... ggtgtaacagGTACACGTCGTTCTCTGAGTTGTTTCCGTTGTTGGCTGCTGGAAATCTACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCCGAGGTTATTGAGCTTATAACGCAGTTGGAGGCGAAGAATCCCACAGAAGCTCCCACAGCAGCTCTCACTCTCCTGAATGGAAAGTGGGTTTTGGCgtacgtattccatccttttctgcacaatgaaaactgaaagaaacatttaactactgttgtttatgcttgtatacacaatttaaaagaatcagggaaattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaat