1 5' 3' | 2 5' 3' | 3 5' 3' |
GGGTTGCAGCTGTTGCTCTGAGGCCCACATTTCGGCAAACCGCGCGAGGTTCCCATAGCCGCAGGTCGTTTGTAGCCGCCGCCGTTGGTGGTGAAGCTGGgtgcgttcttatcctctgcctctcctgcgtggtacttgtttctcttcgtagtgttggtattaggcattgtttgattagtgccggtggcttgagttggttg...
species | Physcomitrella patens |
transcript | PP1S83_99V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCCCATAGCCGCAGGTCGTTTGTAGCCGCCGCCGTTGGTGGTGAAGCTGG ATTTGAGAACGAAGACAACGCAGCCATCGAGATCGAAGGCGATGGTGAGGAEST: gi|100352765|gb|BY945437.1|BY945437
genomic: TCCCATAGCCGCAGGTCGTTTGTAGCCGCCGCCGTTGGTGGTGAAGCTGGgtgcgttctt ... tgaatctcagATTTGAGAACGAAGACAACGCAGCCATCGAGATCGAAGGCGATGGTGAGGA
EST: TCCCATAGCCGCAGGTCGTTTGTAGCCGCCGCCGTTGGTGGTGAAGCTGG ATTTGAGAACGAAGACAACGCAGCCATCGAGATCGAAGGCGATGGTGAGGAEST: gi|100384310|gb|BY969441.1|BY969441
genomic: TCCCATAGCCGCAGGTCGTTTGTAGCCGCCGCCGTTGGTGGTGAAGCTGGgtgcgttctt ... tgaatctcagATTTGAGAACGAAGACAACGCAGCCATCGAGATCGAAGGCGATGGTGAGGA
EST: TCCCATAGCCGCAGGTCGTTTGTAGCCGCCGCCGTTGGTGGTGAAGCTGG ATTTGAGAACGAAGACNACGCAGCCATCGAGATCGAAGGCGATGGTGAGGAEST: gi|67704623|gb|BJ964856.1|BJ964856
genomic: TCCCATAGCCGCAGGTCGTTTGTAGCCGCCGCCGTTGGTGGTGAAGCTGGgtgcgttctt ... tgaatctcagATTTGAGAACGAAGACAACGCAGCCATCGAGATCGAAGGCGATGGTGAGGA
EST: TCCCATAGCCGCAGGTCGTTTGTAGCCGCCGCCGTTGGTGGTGAAGCTGG ATTTGAGAACGAAGACAACGCAGCCATCGAGATCGAAGGCGATGGTGAGGAEST: gi|100422353|gb|BY976332.1|BY976332
genomic: TCCCATAGCCGCAGGTCGTTTGTAGCCGCCGCCGTTGGTGGTGAAGCTGGgtgcgttctt ... tgaatctcagATTTGAGAACGAAGACAACGCAGCCATCGAGATCGAAGGCGATGGTGAGGA
EST: TCCCATAGCCGCAGGTCGTTTGTAGCCGCCGCCGTTGGTGGTGAAGCTGG ATTTGAGAACGAAGACAACGCAGCCATCGAGATCGAAGGCGATGGTGAGGAEST: gi|162195613|gb|FC371914.1|FC371914
genomic: TCCCATAGCCGCAGGTCGTTTGTAGCCGCCGCCGTTGGTGGTGAAGCTGGgtgcgttctt ... tgaatctcagATTTGAGAACGAAGACAACGCAGCCATCGAGATCGAAGGCGATGGTGAGGA
EST: TCCCATAGCCGCAGGTCGTTTGTAGCCGCCGCCGTTGGTGGTGAAGCTGG ATTTGAGAACGAAGACAACGCAGCCATCGAGATCGAAGGCGATGGTGAGGAEST: gi|208400030|gb|DC908607.1|DC908607
genomic: TCCCATAGCCGCAGGTCGTTTGTAGCCGCCGCCGTTGGTGGTGAAGCTGGgtgcgttctt ... tgaatctcagATTTGAGAACGAAGACAACGCAGCCATCGAGATCGAAGGCGATGGTGAGGA
EST: TCCCATAGCCGCAGGTCGTTTGTAGCCGCCGCCGTTGGTGGTGAAGCTGG ATTTGAGAACGAAGACAACGCAGCCATCGAGATCGAAGGCGATGGTGAGGAEST: gi|100390166|gb|BY989246.1|BY989246
genomic: TCCCATAGCCGCAGGTCGTTTGTAGCCGCCGCCGTTGGTGGTGAAGCTGGgtgcgttctt ... tgaatctcagATTTGAGAACGAAGACAACGCAGCCATCGAGATCGAAGGCGATGGTGAGGA
EST: TCCCATAGCCGCAGGTCGTTTGTAGCCGCCGCCGTTGGTGGTGAAGCTGG ATTTGAGAACGAAGACAACGCAGCCATCGAGATCGAAGGCGATGGTGAGGAEST: gi|100419085|gb|BY975850.1|BY975850
genomic: TCCCATAGCCGCAGGTCGTTTGTAGCCGCCGCCGTTGGTGGTGAAGCTGGgtgcgttctt ... tgaatctcagATTTGAGAACGAAGACAACGCAGCCATCGAGATCGAAGGCGATGGTGAGGA
EST: TCCCATAGCCGCAGGTCGTTTGTAGCCGCCGCCGTTGGTGGTGAAGCTGG ATTTGAGAACGAAGACAACGCAGCCATCGAGATCGAAGGCGATGGTGAGGA
genomic: TCCCATAGCCGCAGGTCGTTTGTAGCCGCCGCCGTTGGTGGTGAAGCTGGgtgcgttctt ... tgaatctcagATTTGAGAACGAAGACAACGCAGCCATCGAGATCGAAGGCGATGGTGAGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTTGCAGCTGTTGCTCTGAGGCCCACATTTCGGCAAACCGCGCGAGGTTCCCATAGCCGCAGGTCGTTTGTAGCCGCCGCCGTTGGTGGTGAAGCTGGgtgcgttcttatcctctgcctctcctgcgtggtacttgtttctcttcgtagtgttggtattaggcattgtttgattagtgccggtggcttgagttggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG