1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtatgattaccttattttcttaaactccactcttggatggcatctcaggggccactaatccagaataaatcagatgtcttcagtagcatctttcagttctcgcatctctttctgtcgagtttgtcgggcctattaatgcgtagatttaaaacgtgctaatggggttttctggttgcagTATGTATTCAACAAAAGGGAAGCTTCTGGAGCACAACCTAGATCCTGAGGTGCGGAATGCTCTACAGGCGTTGAAACAGCAATTGAAAACCCAGTAACTG
species | Physcomitrella patens |
transcript | PP1S83_84V6.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATCAACGATGCAAAGGAGGAGTTGCAGGAGTTGCTGTACGATGAAAC TATGTATTCAACAAAAGGGAAGCTTCTGGAGCACAACCTAGATCCTGAGGTEST: gi|67694482|gb|BJ954715.1|BJ954715
genomic: ATCAACGATGCAAAGGAGGAGTTGCAGGAGTTGCTGTACGATGAAACgtatgattac ... ctggttgcagTATGTATTCAACAAAAGGGAAGCTTCTGGAGCACAACCTAGATCCTGAGGT
EST: ATCAACGATGCAAAGGAGGAGTTGCAGGAGTTGCTGTACGATGAAAC TATGTATTCAACAAAAGGGAAGCTTCTGGAGCACAACCTAGATCCTGAGGT
genomic: ATCAACGATGCAAAGGAGGAGTTGCAGGAGTTGCTGTACGATGAAACgtatgattac ... ctggttgcagTATGTATTCAACAAAAGGGAAGCTTCTGGAGCACAACCTAGATCCTGAGGT
tcgggcctattaatgcgtagatttaaaacgtgctaatggggttttctggttgcagTATGTATTCAACAAAAGGGAAGCTTCTGGAGCACAACCTAGATCCTGAGGTGCGGAATGCTCTACAGGCGTTGAAACAGCAATTGAAAACCCAGTAACTG
tgctaat putative branch site (score: 1)
ttttct putative PPT
tagatttaaaa TA-rich tract