1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...aactccaacttctagccacttcctgactcgatagtatgtgaacaccagacaaacttttttatcacaattctgactccctgaacggaaatcgttgttgcagGTGTGAAAGTAGTTTGTGTTTTTGATGCTGTAATGTCGGGTTTGCCCACCCACAAGGAATCTGTGAACAG
species | Physcomitrella patens |
transcript | PP1S83_84V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGCCAGAGACAAACTCATACACGAGCTCATTACATTCACGCATGTGAAAG GTGTGAAAGTAGTTTGTGTTTTTGATGCTGTAATGTCGGGTTTGCCCACCCEST: gi|67694482|gb|BJ954715.1|BJ954715
genomic: GGCCAGAGACAAACTCATACACGAGCTCATTACATTCACGCATGTGAAAGgtattatggt ... gttgttgcagGTGTGAAAGTAGTTTGTGTTTTTGATGCTGTAATGTCGGGTTTGCCCACCC
EST: GGCCAGAGACAAACTCATACACGAGCTCATTACATTCACGCATGTGAAAG GTGTGAAAGTAGTTTGTGTTTTTGATGCTGTAATGTCGGGTTTGCCCACCC
genomic: GGCCAGAGACAAACTCATACACGAGCTCATTACATTCACGCATGTGAAAGgtattatggt ... gttgttgcagGTGTGAAAGTAGTTTGTGTTTTTGATGCTGTAATGTCGGGTTTGCCCACCC
cagacaaacttttttatcacaattctgactccctgaacggaaatcgttgttgcagGTGTGAAAGTAGTTTGTGTTTTTGATGCTGTAATGTCGGGTTTGCCCACCCACAAGGAATCTGTGAACAG
ttctgac putative branch site (score: 2)
ttttttatcacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aactccaacttctagccacttcctgactcgatagtatgtgaacaccagacaaacttttttatcacaattctgactccctgaacggaaatcgttgttgcagGTGTGAAAGTAGTTTGTGTTTTTGATGCTGTAATGTCGGGTTTGCCCACCCACAAGGAATCTGTGAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA