1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAAGGAGAAGCTTCTTGAAAACGGTGACCGCTGGGAAACAGAGATAGCTGAAAACCTTCGATCTGAAAGTCTCTACCGCTGAGTGGCATCCCTGCTGATGgtatgtttcttctcggaaaattgctaggtagacgtcctgaataaagcgctcgattggcggtcactcaagaaattttgtataccaattagaatgcgagagt...
species | Physcomitrella patens |
transcript | PP1S83_83V6.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AAAACCTTCGATCTGAAAGTCTCTACCGCTGAGTGGCATCCCTGCTGATG CCTTTGCAGCTCAATATACAGCGCTGTCCACATCTCGGGCGCTTGTGCAGGEST: gi|162226685|gb|FC403770.1|FC403770
genomic: AAAACCTTCGATCTGAAAGTCTCTACCGCTGAGTGGCATCCCTGCTGATGgtatgtttct ... atgtgtgcagCCTTTGCAGCTCAATATACAGCGCTGTCCACATCTCGGGCGCTTGTGCAGG
EST: AAAACCTTCGATCTGAAAGTCTCTACCGCTGAGTGGTATCCCTGCTGATG CCTTTGCAGCTCAATATACAGCGCTGTCCACATCTCGGGCGCTTGTGCAGGEST: gi|100407453|gb|BY991709.1|BY991709
genomic: AAAACCTTCGATCTGAAAGTCTCTACCGCTGAGTGGCATCCCTGCTGATGgtatgtttct ... atgtgtgcagCCTTTGCAGCTCAATATACAGCGCTGTCCACATCTCGGGCGCTTGTGCAGG
EST: AAAACCTTCGATCTGNAAGTCTCTACCGCTGAGTGGCATCCCTGCTGATG CCTTTGCAGCTCAATATACAGCGCTGTCCACATCTCGGGCGCTTGTGCAGGEST: gi|162226491|gb|FC402445.1|FC402445
genomic: AAAACCTTCGATCTGAAAGTCTCTACCGCTGAGTGGCATCCCTGCTGATGgtatgtttct ... atgtgtgcagCCTTTGCAGCTCAATATACAGCGCTGTCCACATCTCGGGCGCTTGTGCAGG
EST: AAAGTCTCTACCGCTGAGTGGTATCCCTGCTGATG CCTTGGCAGCTCAATATACAGCGCTGTCCACATTTGGGGCGTTTGTGCAGGEST: gi|208398252|gb|DC916419.1|DC916419
genomic: AAAGTCTCTACCGCTGAGTGGCATCCCTGCTGATGgtatgtttct ... atgtgtgcagCCTTTGCAGCTCAATATACAGCGCTGTCCACATCTCGGGCGCTTGTGCAGG
EST: AAAACCTTCGATCTGAAAGTCTCTACCGCTGAGTGGCATCCCTGCTGATG CCTTTGCAGCTCAATATACAGCGCTGTCCACATCTCGGGCGCTTGTGCAGGEST: gi|208365816|gb|DC951051.1|DC951051
genomic: AAAACCTTCGATCTGAAAGTCTCTACCGCTGAGTGGCATCCCTGCTGATGgtatgtttct ... atgtgtgcagCCTTTGCAGCTCAATATACAGCGCTGTCCACATCTCGGGCGCTTGTGCAGG
EST: AAAACCTTCGATCTGAAAGTCTCTACCGCTGAGTGGCATCCCTGCTGATG CCTTTGCAGCTCAATATACAGCGCTGTCCACATCTCGGGCGCTTGTGCAGGEST: gi|67692407|gb|BJ952640.1|BJ952640
genomic: AAAACCTTCGATCTGAAAGTCTCTACCGCTGAGTGGCATCCCTGCTGATGgtatgtttct ... atgtgtgcagCCTTTGCAGCTCAATATACAGCGCTGTCCACATCTCGGGCGCTTGTGCAGG
EST: AAAACCTTCGATCTGAAAGTCTCTACCGCTGAGTGGCATCCCTGCTGATG CCTTTGCAGCTCAATATACAGCGCTGTCCACATCTCGGGCGCTTGTGCAGGEST: gi|162226684|gb|FC403769.1|FC403769
genomic: AAAACCTTCGATCTGAAAGTCTCTACCGCTGAGTGGCATCCCTGCTGATGgtatgtttct ... atgtgtgcagCCTTTGCAGCTCAATATACAGCGCTGTCCACATCTCGGGCGCTTGTGCAGG
EST: AAAACCTTCGATCTGAAAGTCTCTACCGCTGAGTGGTATCCCTGCTGATG CCTTTGCAGCTCAATATACAGCGCTGTCCACATCTCGGGCGCTTGTGCAGG
genomic: AAAACCTTCGATCTGAAAGTCTCTACCGCTGAGTGGCATCCCTGCTGATGgtatgtttct ... atgtgtgcagCCTTTGCAGCTCAATATACAGCGCTGTCCACATCTCGGGCGCTTGTGCAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGAGAAGCTTCTTGAAAACGGTGACCGCTGGGAAACAGAGATAGCTGAAAACCTTCGATCTGAAAGTCTCTACCGCTGAGTGGCATCCCTGCTGATGgtatgtttcttctcggaaaattgctaggtagacgtcctgaataaagcgctcgattggcggtcactcaagaaattttgtataccaattagaatgcgagagt
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