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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTTCAGTCGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACTGGAGTGCAGgtaattattggatatattatttggtaatgcagtatttgatttgatttttatttttttgactccagttgttgttgagattcgttccaaaaattgagatttgtagggattctctaaaagtctgtagtcgctaaggctgatgtggcctcatttcgcttgtcaatgcag

Basic information

species Physcomitrella patens
transcript PP1S83_83V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162226492|gb|FC402446.1|FC402446
EST:     CGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACTGGAGTGCAG                         TTCTGGATCACAGCGTCAATACCTTATTTCTGTCGGAGATGGCCAGAGGCA
genomic: CGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACTGGAGTGCAGgtaattattg ... gtcaatgcagTTCTGGATCACAGCGTCAATACCTTATTTCTGTCGGAGATGGCCAGAGGCA
EST: gi|67569163|gb|BJ941987.1|BJ941987
EST:     CGATCCTGANAAGGCTGCAGAAACTAATGACTCTAAGGACTGGAGTGCAG                         TTCTGGATCACAGCGTCNATACCTTATTTCTGTCGGAGATGGCCAGAGGCA
genomic: CGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACTGGAGTGCAGgtaattattg ... gtcaatgcagTTCTGGATCACAGCGTCAATACCTTATTTCTGTCGGAGATGGCCAGAGGCA
EST: gi|208365908|gb|DC951087.1|DC951087
EST:     CGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACTGGAGTGCAG                         TTCTGGATCACAGCGTCAATACCTTATTTCTGTCGGAGATGGCCAGAGGCA
genomic: CGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACTGGAGTGCAGgtaattattg ... gtcaatgcagTTCTGGATCACAGCGTCAATACCTTATTTCTGTCGGAGATGGCCAGAGGCA
EST: gi|100407453|gb|BY991709.1|BY991709
EST:     CGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACTGGAGTGCAG                         TTCTGGATCACAGCGTCAATACCTTATTTCTGTCGGAGATGGCCAGAGGCA
genomic: CGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACTGGAGTGCAGgtaattattg ... gtcaatgcagTTCTGGATCACAGCGTCAATACCTTATTTCTGTCGGAGATGGCCAGAGGCA
EST: gi|208391815|gb|DC937991.1|DC937991
EST:     CGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACTGGAGTGCAG                         TTCTGGATCACAGCGTCAATACCTTATTTCTGTCGGAGATGGCCAGAGGCA
genomic: CGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACTGGAGTGCAGgtaattattg ... gtcaatgcagTTCTGGATCACAGCGTCAATACCTTATTTCTGTCGGAGATGGCCAGAGGCA
EST: gi|208356711|gb|DC902543.1|DC902543
EST:     CGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACTGGAGTGCAG                         TTCTGGATCACAGCGTCAATACCTTATTTCTGTCGGAGATGGCCAGAGGCA
genomic: CGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACTGGAGTGCAGgtaattattg ... gtcaatgcagTTCTGGATCACAGCGTCAATACCTTATTTCTGTCGGAGATGGCCAGAGGCA
EST: gi|67719791|gb|BJ970050.1|BJ970050
EST:     CGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACTGGAGTGCAG                         TTCTGGATCACAGCGTCAATACCTTATTTCTGTCGGAGATGGCCAGAGGCA
genomic: CGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACTGGAGTGCAGgtaattattg ... gtcaatgcagTTCTGGATCACAGCGTCAATACCTTATTTCTGTCGGAGATGGCCAGAGGCA
EST: gi|208389974|gb|DC938029.1|DC938029
EST:     CGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACTGGAGTGCAG                         TTCTGGATCACAGCGTCAATACCTTATTTCTGTCGGAGATGGCCAGAGGCA
genomic: CGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACTGGAGTGCAGgtaattattg ... gtcaatgcagTTCTGGATCACAGCGTCAATACCTTATTTCTGTCGGAGATGGCCAGAGGCA
EST: gi|100407742|gb|BY955757.1|BY955757
EST:     CGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACTGGAGTGCAG                         TTCTGGATCACAGCGTCAATACCTTATTTCTGTCGGAGATGGCCAGAGGCA
genomic: CGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACTGGAGTGCAGgtaattattg ... gtcaatgcagTTCTGGATCACAGCGTCAATACCTTATTTCTGTCGGAGATGGCCAGAGGCA
EST: gi|208365816|gb|DC951051.1|DC951051
EST:     CGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACTGGAGTGCAG                         TTCTGGATCACAGCGTCAATACCTTATTTCTGTCGGAGATGGCCAGAGGCA
genomic: CGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACTGGAGTGCAGgtaattattg ... gtcaatgcagTTCTGGATCACAGCGTCAATACCTTATTTCTGTCGGAGATGGCCAGAGGCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTCTTCAGTCGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACTGGAGTGCAGgtaattattggatatattatttggtaatgcagtatttgatttgatttttatttttttgactccagttgttgttgagattcgttccaaaaattgagatttgtagggattctctaaaagtctgtagtcgctaaggctgatgtggcctcatttcgcttgtcaatgcag

- - - - - - - - - - - - CTGCAG