Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCGGTGCACTCCTGGCGCCTTGCAGACCTGTCGAGCCTTCTCTGCCGTTGCGCCCCAGGAGTCCCAACAGCCGCAGGAACCTCGCCATCAATTTACTCgtacgcctctgccctttaccccttgtcccattcctggatttcggattgccgaaccttgccgtcactgtttcgggattttttagcattgggttgcctttgt...

Basic information

species Physcomitrella patens
transcript PP1S83_83V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162226492|gb|FC402446.1|FC402446
EST:     TGCGCCCCAGGAGTCCCAACAGCCGCAGGAACCTCGCCATCAATTTACTC                         CTTCTTCAGTCGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACT
genomic: TGCGCCCCAGGAGTCCCAACAGCCGCAGGAACCTCGCCATCAATTTACTCgtacgcctct ... gattgttcagCTTCTTCAGTCGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACT
EST: gi|67569163|gb|BJ941987.1|BJ941987
EST:     TGCGCCCCAGGAGTCCCAACAGCCGCAGGAACCTCGCCATCAATTTACTC                         CTTCTTCAGTCGATCCTGANAAGGCTGCAGAAACTAATGACTCTAAGGACT
genomic: TGCGCCCCAGGAGTCCCAACAGCCGCAGGAACCTCGCCATCAATTTACTCgtacgcctct ... gattgttcagCTTCTTCAGTCGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACT
EST: gi|208365908|gb|DC951087.1|DC951087
EST:     GCGCCCCCAGGAGTCCCAACAGCCGCAGGAACCTCGCCATCAATTTACTC                         CTTCTTCAGTCGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACT
genomic: GCG-CCCCAGGAGTCCCAACAGCCGCAGGAACCTCGCCATCAATTTACTCgtacgcctct ... gattgttcagCTTCTTCAGTCGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACT
EST: gi|100407453|gb|BY991709.1|BY991709
EST:     TGCGCCCCAGGAGTCCCAACAGCCGCAGGAACCTCGCCATCAATTTACTC                         CTTCTTCAGTCGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACT
genomic: TGCGCCCCAGGAGTCCCAACAGCCGCAGGAACCTCGCCATCAATTTACTCgtacgcctct ... gattgttcagCTTCTTCAGTCGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACT
EST: gi|208391815|gb|DC937991.1|DC937991
EST:     TGCGCCCCAGGAGTCCCAACAGCCGCAGGAACCTCGCCATCAATTTACTC                         CTTCTTCAGTCGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACT
genomic: TGCGCCCCAGGAGTCCCAACAGCCGCAGGAACCTCGCCATCAATTTACTCgtacgcctct ... gattgttcagCTTCTTCAGTCGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACT
EST: gi|208356711|gb|DC902543.1|DC902543
EST:     TGCGCCCCAGGAGTCCCAACAGCCGCAGGAACCTCGCCATCAATTTACTC                         CTTCTTCAGTCGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACT
genomic: TGCGCCCCAGGAGTCCCAACAGCCGCAGGAACCTCGCCATCAATTTACTCgtacgcctct ... gattgttcagCTTCTTCAGTCGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACT
EST: gi|67719791|gb|BJ970050.1|BJ970050
EST:     TGCGCCCCAGGAGTCCCAACAGCCGCAGGAACCTCGCCATCAATTTACTC                         CTTCTTCAGTCGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACT
genomic: TGCGCCCCAGGAGTCCCAACAGCCGCAGGAACCTCGCCATCAATTTACTCgtacgcctct ... gattgttcagCTTCTTCAGTCGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACT
EST: gi|208389974|gb|DC938029.1|DC938029
EST:     TGCGCCCCAGGAGTCCCAACAGCCGCAGGAACCTCGCCATCAATTTACTC                         CTTCTTCAGTCGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACT
genomic: TGCGCCCCAGGAGTCCCAACAGCCGCAGGAACCTCGCCATCAATTTACTCgtacgcctct ... gattgttcagCTTCTTCAGTCGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACT
EST: gi|100407742|gb|BY955757.1|BY955757
EST:     TGCGCCCCAGGAGTCCCAACAGCCGCAGGAACCTCGCCATCAATTTACTC                         CTTCTTCAGTCGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACT
genomic: TGCGCCCCAGGAGTCCCAACAGCCGCAGGAACCTCGCCATCAATTTACTCgtacgcctct ... gattgttcagCTTCTTCAGTCGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACT
EST: gi|208365816|gb|DC951051.1|DC951051
EST:     CGCCATCAATTTACTC                         CTTCTTCAGTCGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACT
genomic: CGCCATCAATTTACTCgtacgcctct ... gattgttcagCTTCTTCAGTCGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 30 (downstream exon)
Score: 7

CGCCGGTGCACTCCTGGCGCCTTGCAGACCTGTCGAGCCTTCTCTGCCGTTGCGCCCCAGGAGTCCCAACAGCCGCAGGAACCTCGCCATCAATTTACTCgtacgcctct ... gattgttcagCTTCTTCAGTCGATCCTGAGAAGGCTGCAGAAACTAAGGACTCTAAGGACTGGAGTGCAG




<











<


<