Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAACTATCAGCCTCAAAAGACGAAAGAGTTAACCAAAGAGTACAAGTCAGTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgattcagctcactctccctgctcttctgattgtggtgcctctttcttttcgaaaattgtcttcatttggcgatgctgtatcttatttcagttgacactgttttgggtgtgttgtatag

Basic information

species Physcomitrella patens
transcript PP1S77_67V6.7
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100418194|gb|BY993379.1|BY993379
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTAC-AAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|100376489|gb|BY986191.1|BY986191
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|162279647|gb|FC455893.1|FC455893
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|100422641|gb|BY976475.1|BY976475
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|22491898|gb|BU051821.1|BU051821
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|162154039|gb|FC330274.1|FC330274
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|162149978|gb|FC326509.1|FC326509
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|100445545|gb|CJ975694.1|CJ975694
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|18356788|gb|BJ188847.1|BJ188847
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|162179592|gb|FC355234.1|FC355234
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|162170834|gb|FC347448.1|FC347448
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|162198705|gb|FC374825.1|FC374825
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|100368433|gb|BY967008.1|BY967008
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCA-TGGTATGATGCAAAGGGTTTTGGCAA-GACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|100383766|gb|BY969295.1|BY969295
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|100399802|gb|BY972900.1|BY972900
EST:     TTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAAG                         AACCCAATGGTATGATGCAAAGGGGTTTTGGCAAAGACATAAAA
genomic: TTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAA-Ggtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGG-TTTTGGCAAAGACATAAAA
EST: gi|208348492|gb|DC913206.1|DC913206
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|100383536|gb|BY950320.1|BY950320
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|22492796|gb|BU052719.1|BU052719
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|100389145|gb|BY952349.1|BY952349
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|100356493|gb|BY946393.1|BY946393
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|100398476|gb|BY972627.1|BY972627
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|100412493|gb|BY974761.1|BY974761
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTTGGCAAAGACATAAAATGGGCGT
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTT-GGCAAAGACATAAAATGGGCGT
EST: gi|162154996|gb|FC331414.1|FC331414
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|162198662|gb|FC373456.1|FC373456
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|208348942|gb|DC913366.1|DC913366
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|100439008|gb|BY961914.1|BY961914
EST:     GTTCGTTCCCTGCAAAAGGT-GACCCAGAACGTTTAAAGTATTACCAAAG                         AAAC-AATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|162175972|gb|FC352378.1|FC352378
EST:     GTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|162202569|gb|FC380058.1|FC380058
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|162172926|gb|FC348931.1|FC348931
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|162188510|gb|FC365108.1|FC365108
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|100450777|gb|CJ974434.1|CJ974434
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AA-CCAATGGTATGATGCAAAGG
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGG
EST: gi|208379631|gb|DC927128.1|DC927128
EST:     TCGTTCCCTGCAAAAGGTTGANCCCAGAACGTTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: TCGTTCCCTGCAAAAGGTTGA-CCCAGAACG-TTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|162196272|gb|FC374354.1|FC374354
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|208382425|gb|DC927959.1|DC927959
EST:     TTCGTTCCCTGCAAAAGGNTTGACCCAGAACG-TTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: TTCGTTCCCTGCAAAAGG-TTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|100381203|gb|BY950023.1|BY950023
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|100397597|gb|BY990306.1|BY990306
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCGAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|208385455|gb|DC956653.1|DC956653
EST:     TATTACCAANG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: TATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|100443863|gb|BY982091.1|BY982091
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGAT
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGAT
EST: gi|100433601|gb|BY960613.1|BY960613
EST:     TTCGTTCCCCTGCAAA-GGTTGACCCAGAACGTTTTAAGTATTACAAAAG                         AA-CCAATGGTATGATGCAAAGGG
genomic: TTCGTTCCC-TGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGG
EST: gi|162218807|gb|FC394350.1|FC394350
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|162211311|gb|FC387541.1|FC387541
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|162160009|gb|FC335671.1|FC335671
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|208350239|gb|DC901609.1|DC901609
EST:     GTTCGTTCCCTGCANAAGGTTGACCCANAACGTTTAAAGTATTACCAAAG                         ANACCAATGGTATGATGCANAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|208371531|gb|DC936252.1|DC936252
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGGACGTTTAAAGTATTACCAA-G                         AA-CCNATGGTATGATGCAA-GGGTTTTGGCAA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAA
EST: gi|100406878|gb|BY973912.1|BY973912
EST:     GTTCGTTCCCTGCAAA-GGTTGACCCAGAACGTTTAAAGTAT-ACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|162222137|gb|FC397365.1|FC397365
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|208400149|gb|DC904797.1|DC904797
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|162209829|gb|FC385971.1|FC385971
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|208347143|gb|DC901908.1|DC901908
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCANAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAANACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|208375875|gb|DC926967.1|DC926967
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|208378525|gb|DC927222.1|DC927222
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATNACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATNGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|100387879|gb|BY970624.1|BY970624
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|162245636|gb|FC423319.1|FC423319
EST:     CCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: CCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|100390415|gb|BY952823.1|BY952823
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGNCAA-GGGTTTTGGGCAA-GACATAAAATGGGCG
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATG-CAAAGGGTTTTGG-CAAAGACATAAAATGGGCG
EST: gi|67569405|gb|BJ942229.1|BJ942229
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|162228235|gb|FC404951.1|FC404951
EST:     GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAG                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
genomic: GTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTA
EST: gi|100390343|gb|BY952751.1|BY952751
EST:     TTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTTAAGTATTTACCAA-G                         AAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGT
genomic: TTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATT-ACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 28 (downstream exon)
Score: 8

TCAACTATCAGCCTCAAAAGACGAAAGAGTTAACCAAAGAGTACAAGTCAGTTCGTTCCCTGCAAAAGGTTGACCCAGAACGTTTAAAGTATTACCAAAGgtaagtgatt ... tgttgtatagAAACCAATGGTATGATGCAAAGGGTTTTGGCAAAGACATAAAATGGGCGTACGGACCTTGGCACTTCAATATCGAGGAGCACCTTCTAAATGATGGAATA




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