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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acctgtttacagattgaatcataggttgtgatgttcatgtgcatattagaactcgagcataagttgttaaatgagtttactgggattttgtatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAGCCACTCGGTCACGAGACCGTCGTGCAAGTGACCCCTCGTGACGTCTGGT

Basic information

species Physcomitrella patens
transcript PP1S77_67V6.7
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100392571|gb|BY971776.1|BY971776
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100418194|gb|BY993379.1|BY993379
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100376489|gb|BY986191.1|BY986191
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|162279647|gb|FC455893.1|FC455893
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100422641|gb|BY976475.1|BY976475
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|22491898|gb|BU051821.1|BU051821
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|208363537|gb|DC935288.1|DC935288
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|162149978|gb|FC326509.1|FC326509
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100445545|gb|CJ975694.1|CJ975694
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         C
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcag-
EST: gi|100445545|gb|CJ975694.1|CJ975694
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         C
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcag-
EST: gi|100445545|gb|CJ975694.1|CJ975694
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         C
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcag-
EST: gi|18356788|gb|BJ188847.1|BJ188847
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATACCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100385543|gb|BY969880.1|BY969880
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|162198705|gb|FC374825.1|FC374825
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100368433|gb|BY967008.1|BY967008
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100383766|gb|BY969295.1|BY969295
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100399802|gb|BY972900.1|BY972900
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         C
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcag-
EST: gi|100399802|gb|BY972900.1|BY972900
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         C
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcag-
EST: gi|100399802|gb|BY972900.1|BY972900
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         C
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcag-
EST: gi|2956847|gb|AJ225410.1|AJ225410
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCCGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100428521|gb|BY977849.1|BY977849
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|208348492|gb|DC913206.1|DC913206
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100383536|gb|BY950320.1|BY950320
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGCAG                       
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA--AGgtacgttata ... tatctagc
EST: gi|22492796|gb|BU052719.1|BU052719
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100389145|gb|BY952349.1|BY952349
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100356493|gb|BY946393.1|BY946393
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100398476|gb|BY972627.1|BY972627
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGCAG                       
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTC-AA--AGgtacgttata ... tatctagc
EST: gi|100412493|gb|BY974761.1|BY974761
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         C
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcag-
EST: gi|100412493|gb|BY974761.1|BY974761
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         C
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcag-
EST: gi|100412493|gb|BY974761.1|BY974761
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         C
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcag-
EST: gi|162154996|gb|FC331414.1|FC331414
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|162198662|gb|FC373456.1|FC373456
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|208348942|gb|DC913366.1|DC913366
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100439008|gb|BY961914.1|BY961914
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100355006|gb|BY964953.1|BY964953
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAGAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|162202569|gb|FC380058.1|FC380058
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|162188510|gb|FC365108.1|FC365108
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100440750|gb|BY980570.1|BY980570
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100450777|gb|CJ974434.1|CJ974434
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|18352488|gb|BJ184542.1|BJ184542
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|18344081|gb|BJ176120.1|BJ176120
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100381203|gb|BY950023.1|BY950023
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100397597|gb|BY990306.1|BY990306
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|67571124|gb|BJ943948.1|BJ943948
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100430774|gb|BY978390.1|BY978390
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100443863|gb|BY982091.1|BY982091
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100433601|gb|BY960613.1|BY960613
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100354634|gb|BY983488.1|BY983488
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGACAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|162218807|gb|FC394350.1|FC394350
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|162211311|gb|FC387541.1|FC387541
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|208350239|gb|DC901609.1|DC901609
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|208371531|gb|DC936252.1|DC936252
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100360794|gb|BY965904.1|BY965904
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100441923|gb|BY981146.1|BY981146
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100406878|gb|BY973912.1|BY973912
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|162222137|gb|FC397365.1|FC397365
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|208400149|gb|DC904797.1|DC904797
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100399468|gb|BY972734.1|BY972734
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|162209829|gb|FC385971.1|FC385971
EST:     GATGGCAAGTTCAAAG                         GTGTTTGACTCGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: GATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|208347143|gb|DC901908.1|DC901908
EST:     AATCAGGGCCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100387879|gb|BY970624.1|BY970624
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|18354198|gb|BJ186254.1|BJ186254
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100390415|gb|BY952823.1|BY952823
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|67569405|gb|BJ942229.1|BJ942229
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|162228235|gb|FC404951.1|FC404951
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|18332077|gb|BJ164089.1|BJ164089
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
EST: gi|100390343|gb|BY952751.1|BY952751
EST:     AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAG                         GTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG
genomic: AATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 41

GAATCAAAACACTCAAATCAGGACCAAAGCCGGCAAAGGGCTGTATCCGGATGGCAAGTTCAAAGgtacgttata ... tatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAGCCACTCGGTCACGAGACCGTCGTGCAAGTGACCCCTCGTGACGTCTGGT




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagaactcgagcataagttgttaaatgagtttactgggattttgtatctagcagGTGTTTGACACGGATGTCGGAGTTGAAAAATGGACAATGCCCGACAGCAAGCCACTCGGTCACGAGACCGTCGTGCAAGTGACCCCTCGTGACGTCTGGT
             ataagttgttaaat  TA-rich tract