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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cctcacgtttgcagccgtgtgatctctgtgtgacatgaggtagttaagttgcatcatacatgcaaattcatgtgacttgattatttcgatggtaatgcagGATTTTGCTGCAGATTTCTACGCTAGAAAGCTTCCTCTATACTATAAGTCTGATCCTGTTCCTGCTCAG

Basic information

species Physcomitrella patens
transcript PP1S77_54V6.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162256397|gb|FC432407.1|FC432407
EST:     ATGGATCAAGGTATCTTTNGGAGTCGGATCTCACTGTGGAGAGTTTGAAG                         GATTTTGCTGCAGATTTCTACGCTAGAAAGCTTCCTCTATACTATAAGTCT
genomic: ATGGATCAAGGTATCTTTTGGAGTCGGATCTCACTGTGGAGAGTTTGAAGgtaaatagaa ... ggtaatgcagGATTTTGCTGCAGATTTCTACGCTAGAAAGCTTCCTCTATACTATAAGTCT
EST: gi|162256398|gb|FC432408.1|FC432408
EST:     ATGGATCAAGGTATCTTTTGGAGTCGGATCTCACTGTGGAGAGTTTGAAG                         GATTTTGCTGCAGATTTCTACGCTAGAAAGCTTCCTCTATACTATAAGTCT
genomic: ATGGATCAAGGTATCTTTTGGAGTCGGATCTCACTGTGGAGAGTTTGAAGgtaaatagaa ... ggtaatgcagGATTTTGCTGCAGATTTCTACGCTAGAAAGCTTCCTCTATACTATAAGTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagttgcatcatacatgcaaattcatgtgacttgattatttcgatggtaatgcagGATTTTGCTGCAGATTTCTACGCTAGAAAGCTTCCTCTATACTATAAGTCTGATCCTGTTCCTGCTCAG
                             acttgat  putative branch site (score: 5)
                               ttgattattt  TA-rich tract