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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcatgggtcaattaatttctttgtttcgtttagtgaagtaaccgaagctgagtgtttagattaatggtaggttacaatgcgtggattttttttgctgcagGAAGTACCCAACTATCCATCGCTTTTACTGTATCCTGCTGGCCGGAAGTCGAGTTCACCG

Basic information

species Physcomitrella patens
transcript PP1S77_54V6.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67701500|gb|BJ961733.1|BJ961733
EST:     TTGTGATGGCCAAGTACGATGCGAACTCAAATGAGCACCCAATTTTGATG                         GAAGTACCCAAACTATCCATCGCTTTTACTGTATCCTGCTGNCCGGAAGTC
genomic: TTGTGATGGCCAAGTACGATGCGAACTCAAATGAGCACCCAATTTTGATGgtaagctata ... tttgctgcagGAAGTACCC-AACTATCCATCGCTTTTACTGTATCCTGCTGGCCGGAAGTC
EST: gi|162180317|gb|FC355322.1|FC355322
EST:     TTGTGATGGCCAAGTACGATGCGAACTCAAATGAGCACCCAATTTTGATG                         GAAGTACCCAACTATCCATCGCTTTTACTGTATCCTGCTGGCCGGAAGTCG
genomic: TTGTGATGGCCAAGTACGATGCGAACTCAAATGAGCACCCAATTTTGATGgtaagctata ... tttgctgcagGAAGTACCCAACTATCCATCGCTTTTACTGTATCCTGCTGGCCGGAAGTCG
EST: gi|67726315|gb|BJ976574.1|BJ976574
EST:     TTGTGATGGCCAAGTACGATGCGAACTCAAATGAGCACCCAATTTTGATG                         GAAGTACCCAACTATCCATCGCTTTTACTGTATCCTGCTGGCCGGAAGTCG
genomic: TTGTGATGGCCAAGTACGATGCGAACTCAAATGAGCACCCAATTTTGATGgtaagctata ... tttgctgcagGAAGTACCCAACTATCCATCGCTTTTACTGTATCCTGCTGGCCGGAAGTCG
EST: gi|162256397|gb|FC432407.1|FC432407
EST:     TTGTGATGGCCAAGTACGATGCGAACTCAAATGAGCACCCAATTTTGATG                         GAAGTACCCAACTATCCATCGCTTTTACTGTATCCTGCTGGCCGGAAGTCG
genomic: TTGTGATGGCCAAGTACGATGCGAACTCAAATGAGCACCCAATTTTGATGgtaagctata ... tttgctgcagGAAGTACCCAACTATCCATCGCTTTTACTGTATCCTGCTGGCCGGAAGTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctgagtgtttagattaatggtaggttacaatgcgtggattttttttgctgcagGAAGTACCCAACTATCCATCGCTTTTACTGTATCCTGCTGGCCGGAAGTCGAGTTCACCG
             gattaat  putative branch site (score: 3)
                                        ttttttttgct  putative PPT
         tttagattaat  TA-rich tract