Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgattcctcttgtaaattttctctaaaagatttaaaaagacagattatgcaactgcatagaacttccaccctgacattcgatcgtactgttttcacgcagGTCATGTTTTTGGCGATTGATTTAAAGGATGAGGAGTTTTCAAAGCCTATGCTTGCTGTGTACGGTTTAGACACAGCCAAACCAGTT

Basic information

species Physcomitrella patens
transcript PP1S77_54V6.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162256398|gb|FC432408.1|FC432408
EST:     ATTATGTGAAACCTTTGTATCTGGAAGCAGCGAGGCACTTCAAGGGAAAG                         GTCATGTTTTTGGCGATTGATTTAAAGGATGAGGAGTTTTCAAAGCCTATG
genomic: ATTATGTGAAACCTTTGTATCTGGAAGCAGCGAGGCACTTCAAGGGAAAGgtttgtaaat ... tttcacgcagGTCATGTTTTTGGCGATTGATTTAAAGGATGAGGAGTTTTCAAAGCCTATG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgcaactgcatagaacttccaccctgacattcgatcgtactgttttcacgcagGTCATGTTTTTGGCGATTGATTTAAAGGATGAGGAGTTTTCAAAGCCTATGCTTGCTGTGTACGGTTTAGACACAGCCAAACCAGTT
                       ccctgac  putative branch site (score: 3)
                                         ctgttttc  putative PPT