1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgattactgctttgccccaacctcgattaagtttttcatgtcttttgtgtacatactagcccattctttctagaaccctgttgtgtgtaacaacgtggatgaagtactgaacacctgcgtattattctcgatcttcttgcagCAAGAGTTTCGGAAGTCAGTGTAAAGCTGAGCTACTTACACACAACATACAAAAGTGGAATACTTGGGG
species | Physcomitrella patens |
transcript | PP1S77_270V6.2 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: CCAATTGAAGCTGAGGGGAGGATACGTCANAGGAATGACATCTATATTAT CAAGAGTTTCGGAAGTCAGTGTAAAGCTGAGCTACTTACACACAACATACAEST: gi|162166561|gb|FC343258.1|FC343258
genomic: CCAATTGAAGCTGAGGGGAGGATACGTCAAAGGAATGACATCTATATTATgtgattactg ... cttcttgcagCAAGAGTTTCGGAAGTCAGTGTAAAGCTGAGCTACTTACACACAACATACA
EST: CCAATTGAAGCTGAGGGGAGGATACGTCAAAGGAATGACATCTATATTAT CAAGAGTTTCGGAAGTCAGTGTAAAGCTGAGCTACTTACACACAACATACAEST: gi|162258655|gb|FC434350.1|FC434350
genomic: CCAATTGAAGCTGAGGGGAGGATACGTCAAAGGAATGACATCTATATTATgtgattactg ... cttcttgcagCAAGAGTTTCGGAAGTCAGTGTAAAGCTGAGCTACTTACACACAACATACA
EST: TTGAAGCTGAGGGGAGGATACGTCAAAGGAATGACATCTATATTAT CAAGAGTTTCGGAAGTCAGTGTAAAGCTGAGCTACTTACACACAACATACA
genomic: TTGAAGCTGAGGGGAGGATACGTCAAAGGAATGACATCTATATTATgtgattactg ... cttcttgcagCAAGAGTTTCGGAAGTCAGTGTAAAGCTGAGCTACTTACACACAACATACA
taacaacgtggatgaagtactgaacacctgcgtattattctcgatcttcttgcagCAAGAGTTTCGGAAGTCAGTGTAAAGCTGAGCTACTTACACACAACATACAAAAGTGGAATACTTGGGG
gtgtaac putative branch site (score: 3)
ttctcgatcttctt putative PPT
tattattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgattactgctttgccccaacctcgattaagtttttcatgtcttttgtgtacatactagcccattctttctagaaccctgttgtgtgtaacaacgtggatgaagtactgaacacctgcgtattattctcgatcttcttgcagCAAGAGTTTCGGAAGTCAGTGTAAAGCTGAGCTACTTACACACAACATACAAAAGTGGAATACTTGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA