Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaaaatttggaacatgcgttaaaagaactagtctaggacacaatgcagattgaagccatgattggaattcaagattaccttcgagaatcgtcagatttcgctcttcatctatgattaattattactttccgtttttctttgcgacacggtctcgcagACTTAACTATGCGGAAATACGAGATATGCGTGCGGGGCAACAGAAAGACATTTCCTTGCAAGTGATGGTGCCGAGGTTCACCTCATCCAGGCAGAGGCAG

Basic information

species Physcomitrella patens
transcript PP1S77_270V6.2
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162258656|gb|FC434351.1|FC434351
EST:     GTCATCCTGGAGCTGTTCAACAGTAAAGACAAGAGTATAGGGAAGGCGAT                         ACTTAACTATGCGGAAATACGAGATATGCGTGCGGGGCAACAGAAAGACAT
genomic: GTCATCCTGGAGCTGTTCAACAGTAAAGACAAGAGTATAGGGAAGGCGATgtaagaaaaa ... ggtctcgcagACTTAACTATGCGGAAATACGAGATATGCGTGCGGGGCAACAGAAAGACAT
EST: gi|162166561|gb|FC343258.1|FC343258
EST:     GTCATCCTGGAGCTGTTCAACAGTAAAGACAAGAGTATAGGGAAGGCGAT                         ACTTAACTATGCGGAAATACGAGATATGCGTGCGGGGCAACAGAAAGACAT
genomic: GTCATCCTGGAGCTGTTCAACAGTAAAGACAAGAGTATAGGGAAGGCGATgtaagaaaaa ... ggtctcgcagACTTAACTATGCGGAAATACGAGATATGCGTGCGGGGCAACAGAAAGACAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcatctatgattaattattactttccgtttttctttgcgacacggtctcgcagACTTAACTATGCGGAAATACGAGATATGCGTGCGGGGCAACAGAAAGACATTTCCTTGCAAGTGATGGTGCCGAGGTTCACCTCATCCAGGCAGAGGCAG
          gattaat  putative branch site (score: 3)
     tctatgattaattatt  TA-rich tract