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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGAGCCAGAGGTTTGAAAGACGAACATTCGCATACCCTTTTGAGGTTTACAGGGCTTTGCGCATCGTAAATCCTAGTCCATATATGATTTACCTTCAGgtgtgccaccttccaagctgagcaatccacgagcgtagcgtgaattaaggggtcgtgaagttttctgtagagaatgatgaagtggctaaagctcctgcag...

Basic information

species Physcomitrella patens
transcript PP1S77_252V6.1
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S77_252V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: GRMZM2G138382_T01 (Zea mays), 5'ss of exon 6
TCTGAGCCAGAGGTTTGAAAGACGAACATTCGCATACCCTTTTGAGGTTTACAGGGCTTTGCGCATCGTAAATCCTAGTCCATATATGATTTACCTTCAGgtgtgccaccttccaagctgagca-atccacgagcgtagcgtg--aattaaggggtcgtgaagttttctgtagagaatgatgaagtggctaaagctcctgcag
| | |||||| | ||||| ||||| ||||||||  |||| |||||  | ||  | || ||||||||||||||||||||||||||||||   || || ||||||  | |   | || |   |  | ||      |  || | ||   |  ||    |  | || |  | || |    ||       |    | | ||| |    
TTTAAGCCAGCGTTTTGAGAGACGGACATTCGCCGACCCCTTTGAAATCTATCGTGCATTGCGCATCGTAAATCCTAGTCCATATATGGCCTATCTACAGgtg-actataatacatgtaaaatatatagttttgtataacatgttgaccaacatatact-aattgatatgcatgtgattcatctcttatgacaactcttag--

upper sequence: PP1S77_252V6.1 (Physcomitrella patens), 5'ss of exon 7
lower sequence: Vv06s0004g06320.t01 (Vitis vinifera), 5'ss of exon 6
TCTGAGCCAGAGGTTTGAAAGACGAACATTCGCATACCCTTTTGAGGTTTACAGGGCTTTGCGCATCGTAAATCCTAGTCCATATATGATTTACCTTCAGgtgtgccaccttccaagctgagc----aatccacgagcgtagcgtgaattaaggggtcgtgaagttttctgtagagaatgatgaagtggctaaagctcctgcag
  | || ||| | |||||| |||| ||||| ||| |||| ||||| |||||||| || ||| | || || ||||| ||||||||||||| |||  | |||||||||   ||       | |        |  | | |  ||        ||| |     |||  |||  | ||   | |  |   ||  | |            
ATTAAGTCAGCGTTTTGAACGACGGACATTTGCAGACCCATTTGAAGTTTACAGAGCATTGAGAATTGTTAATCCAAGTCCATATATGACTTATTTACAGgtgtgcttgctcttccatttatttttgggtttaagtgtttatttcatgctaaag---tctgacctttcatttatttatttctt--gttaccag-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162168526|gb|FC344151.1|FC344151
EST:     ACAGGGCTTTGCGCATCGTAAATCCTAGTCCATATATGATTTACCTTCAG                         GCACGGGGTGCCATCATGGTTGCTTCTAGTCCCGAGATACTTACCCGCATT
genomic: ACAGGGCTTTGCGCATCGTAAATCCTAGTCCATATATGATTTACCTTCAGgtgtgccacc ... catcatgcagGCACGGGGTGCCATCATGGTTGCTTCTAGTCCCGAGATACTTACCCGCATT