1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tgtgacaccatacaatttttgaagtaacgtaggtacatagtttatacatggacaggacgtctgttccttatatcctgaaaacatgatggtccgatgacagGGAAGATACAGTATAGTCGGAGTTCAGCCCTCATTGGAGATCATTGCGAAGGAGGATCGTATCATCATATTAAATCACGAGAAGGGTACCCGTGAGGAGA
species | Physcomitrella patens |
transcript | PP1S77_252V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCCGTCTTTTCTTTTCGAGTCAGTTGAAAATGGAAAAAGCATCAATATG GGAAGATACAGTATAGTCGGAGTTCAGCCCTCATTGGAAATCATTGCGAAGEST: gi|100383453|gb|BY950237.1|BY950237
genomic: CTCCGTCTTTTCTTTTCGAGTCAGTTGAAAATGGAAAAAGCATCAATATGgtgagttttt ... ccgatgacagGGAAGATACAGTATAGTCGGAGTTCAGCCCTCATTGGAGATCATTGCGAAG
EST: CTCCGTCTTTTCTTTTCGAGTCAGTTGAAAATGGAAAAAGCATCAATATG GGAAGATACAGTATAGTCGGAGTTCAGCCCTCATTGGAGATCATTGCGAAGEST: gi|162167077|gb|FC342539.1|FC342539
genomic: CTCCGTCTTTTCTTTTCGAGTCAGTTGAAAATGGAAAAAGCATCAATATGgtgagttttt ... ccgatgacagGGAAGATACAGTATAGTCGGAGTTCAGCCCTCATTGGAGATCATTGCGAAG
EST: CTCCGTCTTTTCTTTTCGAGTCAGTTGAAAATGGAAAAAGCATCAATATG GGAAGATACAGTATAGTCGGAGTTCAGCCCTCATTGGAAATCATTGCGAAG
genomic: CTCCGTCTTTTCTTTTCGAGTCAGTTGAAAATGGAAAAAGCATCAATATGgtgagttttt ... ccgatgacagGGAAGATACAGTATAGTCGGAGTTCAGCCCTCATTGGAGATCATTGCGAAG
acatggacaggacgtctgttccttatatcctgaaaacatgatggtccgatgacagGGAAGATACAGTATAGTCGGAGTTCAGCCCTCATTGGAGATCATTGCGAAGGAGGATCGTATCATCATATTAAATCACGAGAAGGGTACCCGTGAGGAGA
ttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgacaccatacaatttttgaagtaacgtaggtacatagtttatacatggacaggacgtctgttccttatatcctgaaaacatgatggtccgatgacagGGAAGATACAGTATAGTCGGAGTTCAGCCCTCATTGGAGATCATTGCGAAGGAGGATCGTATCATCATATTAAATCACGAGAAGGGTACCCGTGAGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA