1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GGCGGTTGTGCCCGAGCATCGGTGAATCCTGTCATTTCCTGCACAGCTTTGCAGACAGCGGTAGATGTACCACCTTCTGAAGAACGAGAGACTACCCCAGgtaatgttgacacaaattgacgttcttaatacaggacgtagggtttaaaagctgatgactgatgtcagatgagagcatgggtagtgctataaatgtgccagttttttctctcgagttgctcttcctgaaggtggatgatacatttatccttaagaattatttcag
species | Physcomitrella patens |
transcript | PP1S77_252V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCAGACAGCGGTAGATGTACCACCTTCTGAAGAACGAGAGACTACCCCAG GGCGTTCGCAGTTTCTGGAGGCTGCACAAAGAGGTAACGTGGTGCCGGTATEST: gi|162171713|gb|FC348174.1|FC348174
genomic: GCAGACAGCGGTAGATGTACCACCTTCTGAAGAACGAGAGACTACCCCAGgtaatgttga ... attatttcagGGCGTTCGCAGTTTCTGGAGGCTGCACAAAGAGGTAACGTGGTGCCGGTAT
EST: TAGATGTACCACCTTCTGAAGAACGAGAGACTACCCCAG GGCGTTCGCAGTTTCTGGAGGCTGCACGAAGAGGTAACGTGGTGCCGGTATEST: gi|100383453|gb|BY950237.1|BY950237
genomic: TAGATGTACCACCTTCTGAAGAACGAGAGACTACCCCAGgtaatgttga ... attatttcagGGCGTTCGCAGTTTCTGGAGGCTGCACAAAGAGGTAACGTGGTGCCGGTAT
EST: GCAGACAGCGGTAGATGTACCACCTTCTGAAGAACGAGAGACTACCCCAG GGCGTTCGCAGTTTCTGGAGGCTGCACAAAGAGGTAACGTGGTGCCGGTATEST: gi|162167077|gb|FC342539.1|FC342539
genomic: GCAGACAGCGGTAGATGTACCACCTTCTGAAGAACGAGAGACTACCCCAGgtaatgttga ... attatttcagGGCGTTCGCAGTTTCTGGAGGCTGCACAAAGAGGTAACGTGGTGCCGGTAT
EST: GCAGACAGCGGTAGATGTACCACCTTCTGAAGAACGAGAGACTACCCCAG GGCGTTCGCAGTTTCTGGAGGCTGCACGAAGAGGTAACGTGGTGCCGGTAT
genomic: GCAGACAGCGGTAGATGTACCACCTTCTGAAGAACGAGAGACTACCCCAGgtaatgttga ... attatttcagGGCGTTCGCAGTTTCTGGAGGCTGCACAAAGAGGTAACGTGGTGCCGGTAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGGTTGTGCCCGAGCATCGGTGAATCCTGTCATTTCCTGCACAGCTTTGCAGACAGCGGTAGATGTACCACCTTCTGAAGAACGAGAGACTACCCCAGgtaatgttgacacaaattgacgttcttaatacaggacgtagggtttaaaagctgatgactgatgtcagatgagagcatgggtagtgctataaatgtgccagttttttctctcgagttgctcttcctgaaggtggatgatacatttatccttaagaattatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC