1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtagctcatctactgtgtgtatttcagagagtagctgatgagtagcagagttctcatacaatctttaagctcgtcgttcatgggatttttacttgcatgtctaagaatgaattcctctggcagGTTCCAACTTTCCAAGTCATTCTAGGCCAAGGCCTTGCGGGCCAAGTTCCTTGGCAAGCAATGTCATTCACTACACTCTGGCTTGAGCTCCTCGGATTTG
species | Physcomitrella patens |
transcript | PP1S77_208V6.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGAGAGTCAACTCAAACAGCTCTGGAAAGGGACAAAGAAAGTGTTGAAG GTTCCAACTTTCCAAGTCATTCTAGGCCAAGGCCTTGCGGGCCAAGTTCCTEST: gi|162165291|gb|FC340805.1|FC340805
genomic: AAGAGAGTCAACTCAAACAGCTCTGGAAAGGGACAAAGAAAGTGTTGAAGgtagctcatc ... cctctggcagGTTCCAACTTTCCAAGTCATTCTAGGCCAAGGCCTTGCGGGCCAAGTTCCT
EST: AAGAGAGTCAACTCAAACAGCTCTGGAAAGGGACAAAGAAAGTGTTGAAG GTTCCAACTTTCCAAGTCATTCTAGGCCAAGGCCTTGCGGGCCAAGTTCCT
genomic: AAGAGAGTCAACTCAAACAGCTCTGGAAAGGGACAAAGAAAGTGTTGAAGgtagctcatc ... cctctggcagGTTCCAACTTTCCAAGTCATTCTAGGCCAAGGCCTTGCGGGCCAAGTTCCT
gctcgtcgttcatgggatttttacttgcatgtctaagaatgaattcctctggcagGTTCCAACTTTCCAAGTCATTCTAGGCCAAGGCCTTGCGGGCCAAGTTCCTTGGCAAGCAATGTCATTCACTACACTCTGGCTTGAGCTCCTCGGATTTG
ttcctct CT-rich tract
atttttactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagctcatctactgtgtgtatttcagagagtagctgatgagtagcagagttctcatacaatctttaagctcgtcgttcatgggatttttacttgcatgtctaagaatgaattcctctggcagGTTCCAACTTTCCAAGTCATTCTAGGCCAAGGCCTTGCGGGCCAAGTTCCTTGGCAAGCAATGTCATTCACTACACTCTGGCTTGAGCTCCTCGGATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC