1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaataatttaacaagaagacgaagttagcatgtgtttaatatatacttttttacaatttttgcctagtatattgaaattttattgttgcttaggttatagaactctttgtcgttgtttcaggtgtttggtgtgcacatgtttcagGTGGCTATTGTGAAAGCGTTCAACGGCATTGGCCTTGCGATGGTAGTTCCTGCGATTCAATCGCTAGTAGCTGACATGCATAGAGAGGGTGAACGCGGAT
species | Physcomitrella patens |
transcript | PP1S77_208V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTTGGGGTATCGCCACTGCCGCCGTAGGGGCGTGCACTGCTTATTGGCAG GTGGCTATTGTGAAAGCGTTCAACGGCATTGGCCTTGCGEST: gi|162170808|gb|FC347422.1|FC347422
genomic: CTTGGGGTATCGCCACTGCCGCCGTAGGGGCGTGCACTGCTTATTGGCAGgtaataattt ... catgtttcagGTGGCTATTGTGAAAGCGTTCAACGGCATTGGCCTTGCG
EST: CTTGGGGTATCGCCACTGCCGCCGTAGGGGCGTGCACTGCTTATTGGCAG GTGGCTATTGTGAAAGCGTTCAACGGCATTGGCCTTGCGATGGTAGTTCCTEST: gi|162165291|gb|FC340805.1|FC340805
genomic: CTTGGGGTATCGCCACTGCCGCCGTAGGGGCGTGCACTGCTTATTGGCAGgtaataattt ... catgtttcagGTGGCTATTGTGAAAGCGTTCAACGGCATTGGCCTTGCGATGGTAGTTCCT
EST: GCCGTAGGGGCGTGCACTGCTTATTGGCAG GTGGCTATTGTGAAAGCGTTCAACGGCATTGGCCTTGCGATGGTAGTTCCTEST: gi|18343389|gb|BJ175427.1|BJ175427
genomic: GCCGTAGGGGCGTGCACTGCTTATTGGCAGgtaataattt ... catgtttcagGTGGCTATTGTGAAAGCGTTCAACGGCATTGGCCTTGCGATGGTAGTTCCT
EST: CTTGGGGTATCGCCACTGCCGCCGTAGGGGCGTGCACTGCTTATTGGCAG GTGGCTATTGTGAAAGCGTTCAACGGCATTGGCCTTGCGATGGTAGTTCCT
genomic: CTTGGGGTATCGCCACTGCCGCCGTAGGGGCGTGCACTGCTTATTGGCAGgtaataattt ... catgtttcagGTGGCTATTGTGAAAGCGTTCAACGGCATTGGCCTTGCGATGGTAGTTCCT
taggttatagaactctttgtcgttgtttcaggtgtttggtgtgcacatgtttcagGTGGCTATTGTGAAAGCGTTCAACGGCATTGGCCTTGCGATGGTAGTTCCTGCGATTCAATCGCTAGTAGCTGACATGCATAGAGAGGGTGAACGCGGAT
tatagaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaataatttaacaagaagacgaagttagcatgtgtttaatatatacttttttacaatttttgcctagtatattgaaattttattgttgcttaggttatagaactctttgtcgttgtttcaggtgtttggtgtgcacatgtttcagGTGGCTATTGTGAAAGCGTTCAACGGCATTGGCCTTGCGATGGTAGTTCCTGCGATTCAATCGCTAGTAGCTGACATGCATAGAGAGGGTGAACGCGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG