1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAAGGAGAGAAACAGCAGGAGGCTCACTTTGATTCTTGTCAATTTGGCTGCTGTTTTGGAGCGAGCCGATGAGGCCCTTCTTCCCGCTGTCTACGACCAGgtcttacgctcttcatctcttccttttcagacagcaagtttacgaatctgtaagtgtaggcctgtgcttaggttgtgtgacgaatttggtattcttgtat...
species | Physcomitrella patens |
transcript | PP1S77_208V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTGTTTTGGAGCGAGCCGATGAGGCCCTTCTTCCCGCTGTCTACGACCAG GTGGGAAAAGCTTTTGGAGTAACACCTGCAGCATTGGGTACATTTGACGTTEST: gi|18357068|gb|BJ189127.1|BJ189127
genomic: CTGTTTTGGAGCGAGCCGATGAGGCCCTTCTTCCCGCTGTCTACGACCAGgtcttacgct ... gcacactcagGTGGGAAAAGCTTTTGGAGTAACACCTGCAGCATTGGGTACATT-GACGTT
EST: CTGTTTTGGAGCGAGCCGATGAGGCCCTTCTTCCCGCTGTCTACGACCAG GTGGGAAAAGCTTTTGGAGTAACACCTGCAGCATTGGGTACATTGACGTTCEST: gi|18364673|gb|BJ196746.1|BJ196746
genomic: CTGTTTTGGAGCGAGCCGATGAGGCCCTTCTTCCCGCTGTCTACGACCAGgtcttacgct ... gcacactcagGTGGGAAAAGCTTTTGGAGTAACACCTGCAGCATTGGGTACATTGACGTTC
EST: CTGTTTTGGAGCGAGCCGATGAGGCCCTTCTTCCCGCTGTCTACGACCAG GTGGGAAAAGCTTTTGGAGTAACACCTGCAGCATTGGGTACATTGACGTTCEST: gi|162170808|gb|FC347422.1|FC347422
genomic: CTGTTTTGGAGCGAGCCGATGAGGCCCTTCTTCCCGCTGTCTACGACCAGgtcttacgct ... gcacactcagGTGGGAAAAGCTTTTGGAGTAACACCTGCAGCATTGGGTACATTGACGTTC
EST: CTGTTTTGGAGCGAGCCGATGAGGCCCTTCTTCCCGCTGTCTACGACCAG GTGGGAAAAGCTTTTGGAGTAACACCTGCAGCATTGGGTACATTGACGTTCEST: gi|18343389|gb|BJ175427.1|BJ175427
genomic: CTGTTTTGGAGCGAGCCGATGAGGCCCTTCTTCCCGCTGTCTACGACCAGgtcttacgct ... gcacactcagGTGGGAAAAGCTTTTGGAGTAACACCTGCAGCATTGGGTACATTGACGTTC
EST: CTGTTTTGGAGCGAGCCGATGAGGCCCTTCTTCCCGCTGTCTACGACCAG GTGGGAAAAGCTTTTGGAGTAACACCTGCAGCATTGGGTACATTGACGTTC
genomic: CTGTTTTGGAGCGAGCCGATGAGGCCCTTCTTCCCGCTGTCTACGACCAGgtcttacgct ... gcacactcagGTGGGAAAAGCTTTTGGAGTAACACCTGCAGCATTGGGTACATTGACGTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGGAGAGAAACAGCAGGAGGCTCACTTTGATTCTTGTCAATTTGGCTGCTGTTTTGGAGCGAGCCGATGAGGCCCTTCTTCCCGCTGTCTACGACCAGgtcttacgctcttcatctcttccttttcagacagcaagtttacgaatctgtaagtgtaggcctgtgcttaggttgtgtgacgaatttggtattcttgtat
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