1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCCAATGCTACGGTGGAAGAGATCTGCGGTTGCTGCCGCGTCCTGTATTCTGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAGgtttgactttgccctgactcctttctctccttattatattagcaatgtgtctattagtgttgcataagcagcagtctgagctgacatagtgataaaatct...
species | Physcomitrella patens |
transcript | PP1S77_205V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: TGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAG GCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACAEST: gi|162173656|gb|FC349624.1|FC349624
genomic: TGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAGgtttgacttt ... gtgtacccagGCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACA
EST: TGGTTGTGAGAGCTGTTGTGGTACAGCTGGGATTCTACCTGCATATGCAG GCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACAEST: gi|162173657|gb|FC349625.1|FC349625
genomic: TGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAGgtttgacttt ... gtgtacccagGCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACA
EST: TGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAG GCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACAEST: gi|162171019|gb|FC346918.1|FC346918
genomic: TGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAGgtttgacttt ... gtgtacccagGCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACA
EST: TGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAG GCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACAEST: gi|162156712|gb|FC333555.1|FC333555
genomic: TGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAGgtttgacttt ... gtgtacccagGCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACA
EST: TGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAG GCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACAEST: gi|208372492|gb|DC948732.1|DC948732
genomic: TGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAGgtttgacttt ... gtgtacccagGCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACA
EST: TGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAG GCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACAEST: gi|162270283|gb|FC447295.1|FC447295
genomic: TGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAGgtttgacttt ... gtgtacccagGCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACA
EST: TGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAG GCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACA
genomic: TGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAGgtttgacttt ... gtgtacccagGCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCAATGCTACGGTGGAAGAGATCTGCGGTTGCTGCCGCGTCCTGTATTCTGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAGgtttgactttgccctgactcctttctctccttattatattagcaatgtgtctattagtgttgcataagcagcagtctgagctgacatagtgataaaatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT