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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cttcattctaaaagttttaggtagttttgagatgctactctctttgctcaattttatgaatcataccgaatttgtcatttaacaatgtacgtgtacccagGCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACAATGGGATTTATGTGCTTTTTTTCCATTGTCATTGCGCTTGCCAAG

Basic information

species Physcomitrella patens
transcript PP1S77_205V6.1
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37826395|gb|BJ584407.1|BJ584407
EST:     TGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAG                         GCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACA
genomic: TGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAGgtttgacttt ... gtgtacccagGCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACA
EST: gi|162173656|gb|FC349624.1|FC349624
EST:     TGGTTGTGAGAGCTGTTGTGGTACAGCTGGGATTCTACCTGCATATGCAG                         GCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACA
genomic: TGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAGgtttgacttt ... gtgtacccagGCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACA
EST: gi|162173657|gb|FC349625.1|FC349625
EST:     TGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAG                         GCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACA
genomic: TGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAGgtttgacttt ... gtgtacccagGCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACA
EST: gi|162171019|gb|FC346918.1|FC346918
EST:     TGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAG                         GCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACA
genomic: TGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAGgtttgacttt ... gtgtacccagGCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACA
EST: gi|162156712|gb|FC333555.1|FC333555
EST:     TGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAG                         GCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACA
genomic: TGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAGgtttgacttt ... gtgtacccagGCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACA
EST: gi|208372492|gb|DC948732.1|DC948732
EST:     TGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAG                         GCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACA
genomic: TGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAGgtttgacttt ... gtgtacccagGCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACA
EST: gi|162270283|gb|FC447295.1|FC447295
EST:     TGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAG                         GCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACA
genomic: TGGTTGTGAGAGCTGTTGTGGTACAGCTTGGATTCTACCTGCATATGCAGgtttgacttt ... gtgtacccagGCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctcaattttatgaatcataccgaatttgtcatttaacaatgtacgtgtacccagGCCTTTGTATTCAGCAGGGCAGCAGCTCTTACTCGACCATTGTGCTTTACAATGGGATTTATGTGCTTTTTTTCCATTGTCATTGCGCTTGCCAAG
                               atttaac  putative branch site (score: 3)
     attttatgaatcata  TA-rich tract