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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ccgagaagttcgatagagggtgttttacgagccccatctaatagtcgtcatatatgcatggcgtgaattgacattcaacaactttcatggcttggtgcagCTGTTCTATGCGGAGTATTTTCTTATACCACTCATGCGGTGAGTGCTTCATCCTTGCACCCATAAATTGTACTTAGAACGGATTGAACAATCAACCTCAT

Basic information

species Physcomitrella patens
transcript PP1S77_205V6.1
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162184435|gb|FC359181.1|FC359181
EST:     ATTTGAGCAGTAGAGCTGCCATTGCTTCATGGTATATGTTCATTTGGAAG                         CTGTTCTATGCGGAGTATTTTCTTATACCACTCATTCGGTGAGTGCTTCAT
genomic: ATTTGAGCAGTAGAGCTGCCATTGCTTCATGGTATATGTTCATTTGGAAGgttagtaatt ... cttggtgcagCTGTTCTATGCGGAGTATTTTCTTATACCACTCATGCGGTGAGTGCTTCAT
EST: gi|37826395|gb|BJ584407.1|BJ584407
EST:     ATTTGAGCAGTAGAGCTGCCATTGCTTCATGGTATATGTTCATTTGGAAG                         CTGTTCTATGCGGAGTATTTTCTTATACCACTCATGCGGTGAGTGCTTCAT
genomic: ATTTGAGCAGTAGAGCTGCCATTGCTTCATGGTATATGTTCATTTGGAAGgttagtaatt ... cttggtgcagCTGTTCTATGCGGAGTATTTTCTTATACCACTCATGCGGTGAGTGCTTCAT
EST: gi|19786753|gb|BQ040535.1|BQ040535
EST:     ATTTGAGCAGTAGAGCTGCCATTGCTTCATGGTATATGTTCATTTGGAAG                         CTGTTCTATGCGGAGTATTTTCTTATACCACTCATGCGGTGAGTGCTTCAT
genomic: ATTTGAGCAGTAGAGCTGCCATTGCTTCATGGTATATGTTCATTTGGAAGgttagtaatt ... cttggtgcagCTGTTCTATGCGGAGTATTTTCTTATACCACTCATGCGGTGAGTGCTTCAT
EST: gi|162173656|gb|FC349624.1|FC349624
EST:     ATTTGAGCAGTAGAGCTGCCATTGCTTCATGGTATATGTTCATTTGGAAG                         CTGTTCTATGCGGAGTATTTTCTTATACCACTCATTCGGTGAGTGCTTCAT
genomic: ATTTGAGCAGTAGAGCTGCCATTGCTTCATGGTATATGTTCATTTGGAAGgttagtaatt ... cttggtgcagCTGTTCTATGCGGAGTATTTTCTTATACCACTCATGCGGTGAGTGCTTCAT
EST: gi|162173657|gb|FC349625.1|FC349625
EST:     ATTTGAGCAGTAGAGCTGCCATTGCTTCATGGTATATGTTCATTTGGAAG                         CTGTTCTATGCGGAGTATTTTCTTATACCACTCATTCGGTGAGTGCTTCAT
genomic: ATTTGAGCAGTAGAGCTGCCATTGCTTCATGGTATATGTTCATTTGGAAGgttagtaatt ... cttggtgcagCTGTTCTATGCGGAGTATTTTCTTATACCACTCATGCGGTGAGTGCTTCAT
EST: gi|37837364|gb|BJ595372.1|BJ595372
EST:     ATTTGAGCAGTAGAGCTGCCATTGCTTCATGGTATATGTTCATTTGGAAG                         CTGTTCTATGCGGAGTATTTTCTTATACCACTCATGCGGTGAGTGCTTCAT
genomic: ATTTGAGCAGTAGAGCTGCCATTGCTTCATGGTATATGTTCATTTGGAAGgttagtaatt ... cttggtgcagCTGTTCTATGCGGAGTATTTTCTTATACCACTCATGCGGTGAGTGCTTCAT
EST: gi|162171019|gb|FC346918.1|FC346918
EST:     ATTTGAGCAGTAGAGCTGCCATTGCTTCATGGTATATGTTCATTTGGAAG                         CTGTTCTATGCGGAGTATTTTCTTATACCACTCATTCGGTGAGTGCTTCAT
genomic: ATTTGAGCAGTAGAGCTGCCATTGCTTCATGGTATATGTTCATTTGGAAGgttagtaatt ... cttggtgcagCTGTTCTATGCGGAGTATTTTCTTATACCACTCATGCGGTGAGTGCTTCAT
EST: gi|162156712|gb|FC333555.1|FC333555
EST:     ATTTGAGCAGTAGAGCTGCCATTGCTTCATGGTATATGTTCATTTGGAAG                         CTGTTCTATGCGGAGTATTTTCTTATACCACTCATTCGGTGAGTGCTTCAT
genomic: ATTTGAGCAGTAGAGCTGCCATTGCTTCATGGTATATGTTCATTTGGAAGgttagtaatt ... cttggtgcagCTGTTCTATGCGGAGTATTTTCTTATACCACTCATGCGGTGAGTGCTTCAT
EST: gi|208372492|gb|DC948732.1|DC948732
EST:     ATTTGAGCAGTAGAGCTGCCATTGCTTCATGGTATATGTTCATTTGGAAG                         CTGTTCTATGCGGAGTATTTTCTTATACCACTCATGCGGTGAGTGCTTCAT
genomic: ATTTGAGCAGTAGAGCTGCCATTGCTTCATGGTATATGTTCATTTGGAAGgttagtaatt ... cttggtgcagCTGTTCTATGCGGAGTATTTTCTTATACCACTCATGCGGTGAGTGCTTCAT
EST: gi|162270283|gb|FC447295.1|FC447295
EST:     ATTTGAGCAGTAGAGCTGCCATTGCTTCATGGTATATGTTCATTTGGAAG                         CTGTTCTATGCGGAGTATTTTCTTATACCACTCATGCGGTGAGTGCTTCAT
genomic: ATTTGAGCAGTAGAGCTGCCATTGCTTCATGGTATATGTTCATTTGGAAGgttagtaatt ... cttggtgcagCTGTTCTATGCGGAGTATTTTCTTATACCACTCATGCGGTGAGTGCTTCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtcatatatgcatggcgtgaattgacattcaacaactttcatggcttggtgcagCTGTTCTATGCGGAGTATTTTCTTATACCACTCATGCGGTGAGTGCTTCATCCTTGCACCCATAAATTGTACTTAGAACGGATTGAACAATCAACCTCAT
                    aattgac  putative branch site (score: 3)
     tatat  TA-rich tract