1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTACGACATGTTGCGCAGGAATGCGCTGCGCGCGGATTCCATCAAGTGCTTCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgttgttgtcgttgctgttgttgttgttgttgccaggtgccggtgagcgtttgtggagaattgtgtttggtcgtggtgggagcggtgtggatgg...
species | Physcomitrella patens |
transcript | PP1S77_16V6.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCANGTGGGCGTGTTCEST: gi|162276618|gb|FC452196.1|FC452196
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTCEST: gi|162245915|gb|FC420504.1|FC420504
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTCEST: gi|100403338|gb|BY991153.1|BY991153
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTCEST: gi|67718867|gb|BJ969126.1|BJ969126
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTCEST: gi|208363851|gb|DC943308.1|DC943308
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTCEST: gi|162216576|gb|FC392473.1|FC392473
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTCEST: gi|208373838|gb|DC956326.1|DC956326
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGG-TTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTCEST: gi|100447722|gb|CJ972021.1|CJ972021
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGANGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCC-AGAN-CTTCANGTGGGCGTGTTCEST: gi|162253751|gb|FC429865.1|FC429865
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTCEST: gi|100366885|gb|BY948259.1|BY948259
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAGGGAC-AG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTTCA-GTGGGCGTGTTEST: gi|67719143|gb|BJ969402.1|BJ969402
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTT-CAAGTGGGCGTGTT
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCEST: gi|208361430|gb|DC930399.1|DC930399
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCC
EST: TCGTGCTGGACGANGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACAAG ATTTACGACATCTTCCAGCTGCTGCCCEST: gi|100446207|gb|CJ970506.1|CJ970506
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGNACCAG ATTTACGACATCTNCCAGCTGCTGCCCEST: gi|100381333|gb|BY950077.1|BY950077
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCC
EST: CGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTTCAGGGAC-AG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTTCA-GTGGGCGTGTEST: gi|100370659|gb|BY948453.1|BY948453
genomic: CGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTT-CAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTT-CAAGTGGGCGTGT
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTTCA-GTGGGCGTGTTEST: gi|162156058|gb|FC332225.1|FC332225
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTT-CAAGTGGGCGTGTT
EST: GACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTCEST: gi|162164223|gb|FC342038.1|FC342038
genomic: GACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTCEST: gi|162187052|gb|FC362834.1|FC362834
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTCEST: gi|100394790|gb|BY989926.1|BY989926
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTCEST: gi|100409310|gb|BY991947.1|BY991947
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTCEST: gi|67724165|gb|BJ974424.1|BJ974424
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTCEST: gi|67719407|gb|BJ969666.1|BJ969666
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCGAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCEST: gi|162177225|gb|FC352654.1|FC352654
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTCEST: gi|67719277|gb|BJ969536.1|BJ969536
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCAAGTGGGCGTGTTC
EST: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAG ATTTACGACATCTTCCAGCTGCTGCCCCA-AAGCTTCA
genomic: TCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgtt ... tgacgtgcagATTTACGACATCTTCCAGCTGCTGCCCCAGAAGCTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACGACATGTTGCGCAGGAATGCGCTGCGCGCGGATTCCATCAAGTGCTTCGTGCTGGACGAGGCCGATGAGATGCTTTCTCGGGGTTTCAAGGACCAGgtgcggtgttgttgtcgttgctgttgttgttgttgttgccaggtgccggtgagcgtttgtggagaattgtgtttggtcgtggtgggagcggtgtggatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG