Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatccttatattcttcatccctgtccttacccgtgtactcttcatatccagtataacgaaatcaacaatacctgtacgtcaagtctacaacttct...

Basic information

species Physcomitrella patens
transcript PP1S77_16V6.2
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18358159|gb|BJ190218.1|BJ190218
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|208372422|gb|DC936510.1|DC936510
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|100403338|gb|BY991153.1|BY991153
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67702991|gb|BJ963224.1|BJ963224
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACACGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67718867|gb|BJ969126.1|BJ969126
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|208349835|gb|DC905959.1|DC905959
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|18363110|gb|BJ195182.1|BJ195182
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CCTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|208363851|gb|DC943308.1|DC943308
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|100389385|gb|BY988863.1|BY988863
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67718279|gb|BJ968538.1|BJ968538
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACNA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67704450|gb|BJ964683.1|BJ964683
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|100368637|gb|BY967105.1|BY967105
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67703042|gb|BJ963275.1|BJ963275
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|18358125|gb|BJ190184.1|BJ190184
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|18327306|gb|BJ159308.1|BJ159308
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67701833|gb|BJ962066.1|BJ962066
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|18355525|gb|BJ187584.1|BJ187584
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67709773|gb|BJ965589.1|BJ965589
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67701617|gb|BJ961850.1|BJ961850
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67704245|gb|BJ964478.1|BJ964478
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|100442439|gb|BY963133.1|BY963133
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGGTGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|100447722|gb|CJ972021.1|CJ972021
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|100390134|gb|BY989214.1|BY989214
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|18342328|gb|BJ174363.1|BJ174363
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67704431|gb|BJ964664.1|BJ964664
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|100366885|gb|BY948259.1|BY948259
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATCTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67716207|gb|BJ966467.1|BJ966467
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67703558|gb|BJ963791.1|BJ963791
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67719143|gb|BJ969402.1|BJ969402
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|208361430|gb|DC930399.1|DC930399
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67717106|gb|BJ967365.1|BJ967365
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|100446207|gb|CJ970506.1|CJ970506
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67709537|gb|BJ965353.1|BJ965353
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|100428610|gb|BY959345.1|BY959345
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|162218269|gb|FC394443.1|FC394443
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|208384497|gb|DC914969.1|DC914969
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67704064|gb|BJ964297.1|BJ964297
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67703926|gb|BJ964159.1|BJ964159
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|100440106|gb|BY980398.1|BY980398
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|18364937|gb|BJ197011.1|BJ197011
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|18357718|gb|BJ189777.1|BJ189777
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67702239|gb|BJ962472.1|BJ962472
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|100381333|gb|BY950077.1|BY950077
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|100359392|gb|BY984231.1|BY984231
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67703162|gb|BJ963395.1|BJ963395
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67704170|gb|BJ964403.1|BJ964403
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|100370659|gb|BY948453.1|BY948453
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|100430469|gb|BY959885.1|BY959885
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|18370381|gb|BJ201983.1|BJ201983
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|100436836|gb|BY979549.1|BY979549
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|100374012|gb|BY967902.1|BY967902
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67710287|gb|BJ965950.1|BJ965950
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|100420569|gb|BY976073.1|BY976073
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67704349|gb|BJ964582.1|BJ964582
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|162164223|gb|FC342038.1|FC342038
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|100394790|gb|BY989926.1|BY989926
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67704756|gb|BJ964989.1|BJ964989
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67701961|gb|BJ962194.1|BJ962194
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67709319|gb|BJ965135.1|BJ965135
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|100409310|gb|BY991947.1|BY991947
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67718381|gb|BJ968640.1|BJ968640
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|18366726|gb|BJ198805.1|BJ198805
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67719407|gb|BJ969666.1|BJ969666
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
EST: gi|67719277|gb|BJ969536.1|BJ969536
EST:     GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT                         CTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA
genomic: GAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatcc ... tgtatctcagCTTGGGCGGCGAGGGAGAGGACTTCATTTCCACATGGGAGGAGGTCCACGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCATgtaagcatccttatattcttcatccctgtccttacccgtgtactcttcatatccagtataacgaaatcaacaatacctgtacgtcaagtctacaacttct

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA