Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtcggtgcattccttgtcattcctcctgggttcgcagctcatcattcattcactctcatggcccagctgatcgtctccttgtgtttatggaatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT

Basic information

species Physcomitrella patens
transcript PP1S77_16V6.2
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18358159|gb|BJ190218.1|BJ190218
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|208372422|gb|DC936510.1|DC936510
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|100403338|gb|BY991153.1|BY991153
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67702991|gb|BJ963224.1|BJ963224
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67718867|gb|BJ969126.1|BJ969126
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|208349835|gb|DC905959.1|DC905959
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|18363110|gb|BJ195182.1|BJ195182
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|208363851|gb|DC943308.1|DC943308
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|100389385|gb|BY988863.1|BY988863
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67718279|gb|BJ968538.1|BJ968538
EST:     NGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACGCAAAATGGCATGGATCTGCACCAGAAGGATCTCAGTTCGATGCCC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACAC-CAAAATGGC-TGGATCTGCACCAGAAGGATCTCAGTTCGATGCCC
EST: gi|67704450|gb|BJ964683.1|BJ964683
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|100368637|gb|BY967105.1|BY967105
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67703042|gb|BJ963275.1|BJ963275
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|18358125|gb|BJ190184.1|BJ190184
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|18327306|gb|BJ159308.1|BJ159308
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67701833|gb|BJ962066.1|BJ962066
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|18355525|gb|BJ187584.1|BJ187584
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67709773|gb|BJ965589.1|BJ965589
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67701617|gb|BJ961850.1|BJ961850
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67704245|gb|BJ964478.1|BJ964478
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|100442439|gb|BY963133.1|BY963133
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|100447722|gb|CJ972021.1|CJ972021
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|100390134|gb|BY989214.1|BY989214
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|18342328|gb|BJ174363.1|BJ174363
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67704431|gb|BJ964664.1|BJ964664
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|100366885|gb|BY948259.1|BY948259
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67716207|gb|BJ966467.1|BJ966467
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67703558|gb|BJ963791.1|BJ963791
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67719143|gb|BJ969402.1|BJ969402
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|208361430|gb|DC930399.1|DC930399
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67717106|gb|BJ967365.1|BJ967365
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|100446207|gb|CJ970506.1|CJ970506
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67709537|gb|BJ965353.1|BJ965353
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|100428610|gb|BY959345.1|BY959345
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|162218269|gb|FC394443.1|FC394443
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|208384497|gb|DC914969.1|DC914969
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67704064|gb|BJ964297.1|BJ964297
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67703926|gb|BJ964159.1|BJ964159
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|100440106|gb|BY980398.1|BY980398
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|18364937|gb|BJ197011.1|BJ197011
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|18357718|gb|BJ189777.1|BJ189777
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67702239|gb|BJ962472.1|BJ962472
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|100381333|gb|BY950077.1|BY950077
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|100359392|gb|BY984231.1|BY984231
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67703162|gb|BJ963395.1|BJ963395
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67704170|gb|BJ964403.1|BJ964403
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|100370659|gb|BY948453.1|BY948453
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|100430469|gb|BY959885.1|BY959885
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|18370381|gb|BJ201983.1|BJ201983
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|100436836|gb|BY979549.1|BY979549
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|100374012|gb|BY967902.1|BY967902
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67710287|gb|BJ965950.1|BJ965950
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|100420569|gb|BY976073.1|BY976073
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67704349|gb|BJ964582.1|BJ964582
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|162164223|gb|FC342038.1|FC342038
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|100394790|gb|BY989926.1|BY989926
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67704756|gb|BJ964989.1|BJ964989
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67701961|gb|BJ962194.1|BJ962194
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67709319|gb|BJ965135.1|BJ965135
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|100409310|gb|BY991947.1|BY991947
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67718381|gb|BJ968640.1|BJ968640
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|18366726|gb|BJ198805.1|BJ198805
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67719407|gb|BJ969666.1|BJ969666
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
EST: gi|67719277|gb|BJ969536.1|BJ969536
EST:     TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTG                         CACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC
genomic: TGCACTCTTTGTCGACGTCTCCCCCGATTTCCCTCCGCTACTATTCATTGgtaatgtagt ... aatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcattcactctcatggcccagctgatcgtctccttgtgtttatggaatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT
                   agctgat  putative branch site (score: 4)
                                    tgtttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcggtgcattccttgtcattcctcctgggttcgcagctcatcattcattcactctcatggcccagctgatcgtctccttgtgtttatggaatgctgcagCACACCAAAATGGCTGGATCTGCACCAGAAGGATCTCAGTTCGATGCCCGCCAGTATGACGCGAAGATGGAGACCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA