1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAATGAAGATTGAGATAATTGGCACAAATTTACGCCCTGCGCGATTCAATGGAGGCTTAACAGTATTTGCTGGTCGTGGACGCGCTGTTGCTTCACCATTgtaatttcattttcactcatttacttttcttgtcttttcgtttcttcttgctgattcaagttttctaatttctttgcttgcaatgaggtttatagaaggc...
species | Physcomitrella patens |
transcript | PP1S77_164V6.2 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GGAGGCTTAACAGTATTTGCTGGTCGTGGACGCGCTGTTGCTTCACCATT TGTGCCTTTCGTGCGGGGTCCAGGTTCATTCCGAGGTAGAGGCGCATTCAGEST: gi|67724423|gb|BJ974682.1|BJ974682
genomic: GGAGGCTTAACAGTATTTGCTGGTCGTGGACGCGCTGTTGCTTCACCATTgtaatttcat ... gtttctgtagTGTGCCTTTCGTGCGGGGTCCAGGTTCATTCCGAGGTAGAGGCGCATTCAG
EST: GGAGGCTTAACAGTATTTGCTGGTCGTGGACGCGCTGTTGCTTCACCATT TGTGCCTTTCGTGCGGGGTCCAGGTTCATTCCGAGGTAGAGGCGCATTCAGEST: gi|67696933|gb|BJ957166.1|BJ957166
genomic: GGAGGCTTAACAGTATTTGCTGGTCGTGGACGCGCTGTTGCTTCACCATTgtaatttcat ... gtttctgtagTGTGCCTTTCGTGCGGGGTCCAGGTTCATTCCGAGGTAGAGGCGCATTCAG
EST: GGAGGCTTAACAGTATTTGCTGGTCGTGGACGCGCTGTTGCTTCACCATT TGTGCCTTTCGTGCGGGGTCCAGGTTCATTCCGAGGTAGAGGCGCATTCAGEST: gi|67699238|gb|BJ959471.1|BJ959471
genomic: GGAGGCTTAACAGTATTTGCTGGTCGTGGACGCGCTGTTGCTTCACCATTgtaatttcat ... gtttctgtagTGTGCCTTTCGTGCGGGGTCCAGGTTCATTCCGAGGTAGAGGCGCATTCAG
EST: GGAGGCTTAACAGTATTTGCTGGTCGTGGACGCGCTGTTGCTTCACCATT TGTGCCTTTCGTGCGGGGTCCAGGTTCATTCCGAGGTAGAGGCGCATTCAGEST: gi|162211634|gb|FC387922.1|FC387922
genomic: GGAGGCTTAACAGTATTTGCTGGTCGTGGACGCGCTGTTGCTTCACCATTgtaatttcat ... gtttctgtagTGTGCCTTTCGTGCGGGGTCCAGGTTCATTCCGAGGTAGAGGCGCATTCAG
EST: GGAGGCTTAACAGTATTTGCTGGTCGTGGACGCGCTGTTGCTTCACCATT TGTGCCTTTCGTGCGGGGTCCAGGTTCATTCCGAGGTAGAGGCGCATTCAGEST: gi|37836978|gb|BJ594986.1|BJ594986
genomic: GGAGGCTTAACAGTATTTGCTGGTCGTGGACGCGCTGTTGCTTCACCATTgtaatttcat ... gtttctgtagTGTGCCTTTCGTGCGGGGTCCAGGTTCATTCCGAGGTAGAGGCGCATTCAG
EST: GGAGGCTTAACAGTATTTGCTGGTCGTGGACGCGCTGTT-CTTCACCATT TGTGCCTTTCGTGCGGGGTCCAGGTTCATTCCGAGGTAGAGGCGCATTCAGEST: gi|67724216|gb|BJ974475.1|BJ974475
genomic: GGAGGCTTAACAGTATTTGCTGGTCGTGGACGCGCTGTTGCTTCACCATTgtaatttcat ... gtttctgtagTGTGCCTTTCGTGCGGGGTCCAGGTTCATTCCGAGGTAGAGGCGCATTCAG
EST: GGAGGCTTAACAGTATTTGCTGGTCGTGGACGCGCTGTTGCTTCACCATT TGTGCCTTTCGTGCGGGGTCCAGGTTCATTCCGAGGTAGAGGCGCATTCAG
genomic: GGAGGCTTAACAGTATTTGCTGGTCGTGGACGCGCTGTTGCTTCACCATTgtaatttcat ... gtttctgtagTGTGCCTTTCGTGCGGGGTCCAGGTTCATTCCGAGGTAGAGGCGCATTCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATGAAGATTGAGATAATTGGCACAAATTTACGCCCTGCGCGATTCAATGGAGGCTTAACAGTATTTGCTGGTCGTGGACGCGCTGTTGCTTCACCATTgtaatttcattttcactcatttacttttcttgtcttttcgtttcttcttgctgattcaagttttctaatttctttgcttgcaatgaggtttatagaaggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT