1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaatattatttatctatttatttatttctttatccttctctgtaaatagcgcgagttttacatcagagttttctttaagtgagtccttttgagacgtcttagtcttagctgtacaatacgaggtcgatgtttttattaattttcactgttgcctttgttgcggaattgtagGGAACAGCGGAGGTAGTATTCATAAGGAAACCCGATGCTCTCAGTGCAATGAAGAGATATAATAATGTCCAGCTGGATGGAAAGCCAATGAAGATTGAGA
species | Physcomitrella patens |
transcript | PP1S77_164V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGATTTGAAGAGATGCTCTATTAACTACGATCGAAGCGGTCGTTCTAAG GGAACAGCGGAGGTAGTATTCATAAGGAAACCCGATGCTCTCAGTGCAATGEST: gi|67724423|gb|BJ974682.1|BJ974682
genomic: GTGATTTGAAGAGATGCTCTATTAACTACGATCGAAGCGGTCGTTCTAAGgtaatattat ... ggaattgtagGGAACAGCGGAGGTAGTATTCATAAGGAAACCCGATGCTCTCAGTGCAATG
EST: GTGATTTGAAGAGATGCTCTATTAACTACGATCGAAGCGGTCGTTCTAAG GGAACAGCGGAGGTAGTATTCATAAGGAAACCCGATGCTCTCAGTGCAATGEST: gi|67696933|gb|BJ957166.1|BJ957166
genomic: GTGATTTGAAGAGATGCTCTATTAACTACGATCGAAGCGGTCGTTCTAAGgtaatattat ... ggaattgtagGGAACAGCGGAGGTAGTATTCATAAGGAAACCCGATGCTCTCAGTGCAATG
EST: ATCGAAGCGGTCGTTCTAAG GGAACAGCGGAGGTAGTATTCATAAGGAAACCCCGATGCTCTCAGTGCAATEST: gi|162211634|gb|FC387922.1|FC387922
genomic: ATCGAAGCGGTCGTTCTAAGgtaatattat ... ggaattgtagGGAACAGCGGAGGTAGTATTCATAAGGAAA-CCCGATGCTCTCAGTGCAAT
EST: GTGATTTGAAGAGATGCTCTATTAACTACGATCGAAGCGGTCGTTCTAAG GGAACAGCGGAGGTAGTATTCATAAGGAAACCCGATGCTCTCAGTGCAATGEST: gi|67724216|gb|BJ974475.1|BJ974475
genomic: GTGATTTGAAGAGATGCTCTATTAACTACGATCGAAGCGGTCGTTCTAAGgtaatattat ... ggaattgtagGGAACAGCGGAGGTAGTATTCATAAGGAAACCCGATGCTCTCAGTGCAATG
EST: GTGATTTGAAGAGATGCTCTATTAACTACGATCGAAGCGGTCGTTCTAAG GGAACAGCGGAGGTAGTATTCATAAGGAAACCCGATGCTCTCAGTGCAATG
genomic: GTGATTTGAAGAGATGCTCTATTAACTACGATCGAAGCGGTCGTTCTAAGgtaatattat ... ggaattgtagGGAACAGCGGAGGTAGTATTCATAAGGAAACCCGATGCTCTCAGTGCAATG
tacgaggtcgatgtttttattaattttcactgttgcctttgttgcggaattgtagGGAACAGCGGAGGTAGTATTCATAAGGAAACCCGATGCTCTCAGTGCAATGAAGAGATATAATAATGTCCAGCTGGATGGAAAGCCAATGAAGATTGAGA
tattaat putative branch site (score: 11)
atgtttttattaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatattatttatctatttatttatttctttatccttctctgtaaatagcgcgagttttacatcagagttttctttaagtgagtccttttgagacgtcttagtcttagctgtacaatacgaggtcgatgtttttattaattttcactgttgcctttgttgcggaattgtagGGAACAGCGGAGGTAGTATTCATAAGGAAACCCGATGCTCTCAGTGCAATGAAGAGATATAATAATGTCCAGCTGGATGGAAAGCCAATGAAGATTGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA