1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
TACGGGTTCTTCTGGAGAAACGAAATGGGTTGTGGCTTCTCGGTTAAGAGATCACCTACTACTGCCAAGCGAGAGGAAAGTGGCAACACTTTGGAAGGAGgtaggtgtttttatgttgatggtgtaatttttcgctcatatctgctgcgcaaaattgaaaaaggcaattcatcatgcatacttgtctttctttacttcacgtgttcag
species | Physcomitrella patens |
transcript | PP1S6_218V6.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: ATCACCTACTACTGCCAAGCGAGAGGAAAGTGGCAACACTTTGGAAGGAG GTAGAGCGGCTGGTGCAAGAAGACTCCCGAATTGATCAGTACCCGAAGCTTEST: gi|162201493|gb|FC378233.1|FC378233
genomic: ATCACCTACTACTGCCAAGCGAGAGGAAAGTGGCAACACTTTGGAAGGAGgtaggtgttt ... acgtgttcagGTAGAGCGGCTGGTGCAAGAAGACTCCCGAATTGATCAGTACCCGAAGCTT
EST: ATCACCTACTACTGCCAAGCGAGAGGAAAGTGGCAACACTTTGGAAGGAG GTAGAGCGGCTGGTGCAAGAAGACTCCCGAATTGATCAGTACCCGAAGCTTEST: gi|6167481|gb|AW145745.1|AW145745
genomic: ATCACCTACTACTGCCAAGCGAGAGGAAAGTGGCAACACTTTGGAAGGAGgtaggtgttt ... acgtgttcagGTAGAGCGGCTGGTGCAAGAAGACTCCCGAATTGATCAGTACCCGAAGCTT
EST: CCAAGCGAGAGGAAAGTGGCAACACTTTGGAAGGAG GTAGAGCGGCTGGTGCAAGAAGACTCCCGAATTGATCAGTACCCGAAGCTT
genomic: CCAAGCGAGAGGAAAGTGGCAACACTTTGGAAGGAGgtaggtgttt ... acgtgttcagGTAGAGCGGCTGGTGCAAGAAGACTCCCGAATTGATCAGTACCCGAAGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TACGGGTTCTTCTGGAGAAACGAAATGGGTTGTGGCTTCTCGGTTAAGAGATCACCTACTACTGCCAAGCGAGAGGAAAGTGGCAACACTTTGGAAGGAGgtaggtgtttttatgttgatggtgtaatttttcgctcatatctgctgcgcaaaattgaaaaaggcaattcatcatgcatacttgtctttctttacttcacgtgttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG