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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcagaaacatctaactcaaggtctttgtcaggactcttgttctttcgttgcaattctaaaacgttcgaagcttaacagagtttttgatggttgataacagGTTGAGAGAATTTCGATGTCCGATTGCGCTGGCTTTGACGTATCAACCTATTGGATGTAGAATCCGAAAGCTTATCAAAGCCAACATATATGGCATCTTT

Basic information

species Physcomitrella patens
transcript PP1S6_218V6.1
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208371939|gb|DC948342.1|DC948342
EST:     GCATTGCAGNTAGTGCGTGACAAACTCAACATCCGCATAGATGATTTT-G                         GNTGAGAGAATTTCGATGTCCGATTGCGCTGGCTTTGACGTATCAACCTAT
genomic: GCATTGCAGCTAGTGCGTGACAAACTCAACATCCGCATAGATGATTTTGGgtttgaacta ... ttgataacagGTTGAGAGAATTTCGATGTCCGATTGCGCTGGCTTTGACGTATCAACCTAT
EST: gi|162201493|gb|FC378233.1|FC378233
EST:     CTAGTGCGTGACAAACTCAACATCCGCATAGATGATTTTGG                         GTTGAGAGAATTTCGATGTCCGATTGCGCTGGCTTTGACGTATCAACCTAT
genomic: CTAGTGCGTGACAAACTCAACATCCGCATAGATGATTTTGGgtttgaacta ... ttgataacagGTTGAGAGAATTTCGATGTCCGATTGCGCTGGCTTTGACGTATCAACCTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgttgcaattctaaaacgttcgaagcttaacagagtttttgatggttgataacagGTTGAGAGAATTTCGATGTCCGATTGCGCTGGCTTTGACGTATCAACCTATTGGATGTAGAATCCGAAAGCTTATCAAAGCCAACATATATGGCATCTTT
      aattctaaaa  TA-rich tract