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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcactatctaaacccttctctttcttaatgagcatgtctaccactagaattaattgaaatggactatcaggttatgaatcatcacttgtgcacattgaaaatctccagaccttgagagtttttatgtgaatattgagtttaaccatccattgtgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTGAATGGATTGCACACGGGAAATGTAATCCTCCGACTTGTCGAAGCAGTTG

Basic information

species Physcomitrella patens
transcript PP1S6_194V6.3
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100403161|gb|BY991065.1|BY991065
EST:     TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAA                         GGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAAAAGTGTTTG
genomic: TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
EST: gi|162264351|gb|FC440517.1|FC440517
EST:     TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG                         GGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
genomic: TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
EST: gi|162254308|gb|FC430443.1|FC430443
EST:     TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG                         GGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
genomic: TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
EST: gi|162168288|gb|FC344602.1|FC344602
EST:     TGACTGCGATCGTTGGCTCGTTAGAAGGGTCCTTACTTTGCTTCGTCAAG                         GGGGGTGGATTCATATGTGAATCGTTCATTTCATACTTTGA
genomic: TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGA
EST: gi|162228323|gb|FC404376.1|FC404376
EST:     TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG                         GGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
genomic: TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
EST: gi|162184316|gb|FC359712.1|FC359712
EST:     TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG                         GGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
genomic: TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
EST: gi|162152960|gb|FC329262.1|FC329262
EST:     TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG                         GGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
genomic: TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
EST: gi|162276264|gb|FC452098.1|FC452098
EST:     TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG                         GGGTGTGGATTCATATGTGAATCGTTCATTTCATAC
genomic: TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATAC
EST: gi|162198166|gb|FC373090.1|FC373090
EST:     TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG                         GGGTGTGGATTCATATGTGAA
genomic: TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAA
EST: gi|208375595|gb|DC902812.1|DC902812
EST:     TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG                         GGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
genomic: TGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG
EST: gi|100352991|gb|BY945552.1|BY945552
EST:     GACTGCGATCNGT-GGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG                         GGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTGGAGATGTGTTTG
genomic: GACTGCGATC-GTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAGgtcactatct ... tgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaccttgagagtttttatgtgaatattgagtttaaccatccattgtgtaacgtagGGGTGTGGATTCATATGTGAATCGTTCATTTCATACTTTGAGATGTGTTTGAATGGATTGCACACGGGAAATGTAATCCTCCGACTTGTCGAAGCAGTTG
                                            gtgtaac  putative branch site (score: 3)
           tttttatgtgaatatt  TA-rich tract