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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggccaaatcatccctagagagacttgtgtaattgaggcgatctctaagaaccttcggtttacttctgatgcgatgcctaatctatattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG

Basic information

species Physcomitrella patens
transcript PP1S6_194V6.3
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100401694|gb|BY954660.1|BY954660
EST:     CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG                         GCTATTTTTGATTTCCGGTTCCT
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCT
EST: gi|162183888|gb|FC360194.1|FC360194
EST:     CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG                         GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: gi|100403161|gb|BY991065.1|BY991065
EST:     CTTTGGGCAANGAACAATGGATTCAGACTGTTGAGAGTANGATCGAANAG                         GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: gi|162264351|gb|FC440517.1|FC440517
EST:     CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG                         GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: gi|162254308|gb|FC430443.1|FC430443
EST:     CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG                         GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: gi|162168288|gb|FC344602.1|FC344602
EST:     CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG                         GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: gi|162228323|gb|FC404376.1|FC404376
EST:     CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG                         GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: gi|162168368|gb|FC344682.1|FC344682
EST:     CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG                         GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: gi|100390042|gb|BY989122.1|BY989122
EST:     CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG                         GCTATTTTTGATTTCGGGTTCCTTACCCTGACTGCG
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCG
EST: gi|100443443|gb|BY981870.1|BY981870
EST:     TTGGGGCA-GGAAACA-TGGATTCAGACTGTTGAGAGTAGGATCGAAAAG                         GCTATTTTTGATTTCCGGTTC-TTACCCTGACTGCGATCGTTGGCTCGTTA
genomic: TTGGG-CAAGGAA-CAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: gi|162184316|gb|FC359712.1|FC359712
EST:     CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG                         GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: gi|162265401|gb|FC440727.1|FC440727
EST:     CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG                         GCTATTTTTGAT
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGAT
EST: gi|162189669|gb|FC366307.1|FC366307
EST:     CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG                         GCTATTTTTGATTTCC
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCC
EST: gi|162152960|gb|FC329262.1|FC329262
EST:     CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG                         GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: gi|162276264|gb|FC452098.1|FC452098
EST:     CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG                         GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: gi|162198166|gb|FC373090.1|FC373090
EST:     CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG                         GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: gi|162266717|gb|FC442038.1|FC442038
EST:     CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTANGATCGAANAG                         GCTATTTTTGATTTCCGGTTC
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTC
EST: gi|208375595|gb|DC902812.1|DC902812
EST:     CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG                         GCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTA
EST: gi|100378828|gb|BY968709.1|BY968709
EST:     CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG                         GCTATTTTTGATTTCCGGTTCCTT
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTT
EST: gi|100445919|gb|CJ970218.1|CJ970218
EST:     CTTTGGGCAAGGAACAATGGATTCANACTGTTGAGAGTANGATCNAAAAG                         GCTATTTT-GATTTCCGGTTCCTTACCCTGACTGCNATCGTTG
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTG
EST: gi|100352991|gb|BY945552.1|BY945552
EST:     CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAG                         GCTATTTTTGATTTCCGGT-CCNNTACCCTGACTGCGATCNGT-GGCTCGT
genomic: CTTTGGGCAAGGAACAATGGATTCAGACTGTTGAGAGTAGGATCGAAAAGgtatggccaa ... tattgtgcagGCTATTTTTGATTTCCGGTTCCT-TACCCTGACTGCGATC-GTTGGCTCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctctaagaaccttcggtttacttctgatgcgatgcctaatctatattgtgcagGCTATTTTTGATTTCCGGTTCCTTACCCTGACTGCGATCGTTGGCTCGTTAGTAGGGTCCTTACTTTGCTTCGTCAAG
                                   gcctaat  putative branch site (score: 3)
                                      taatctatatt  TA-rich tract