1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...atgttatataaaaaacgtttcgaattttttggaagttgagatatttgtctatgcgatttcgtaggtatcaaaggactaatatgcttgttgcaaacgacagGTACTCAAACCCAGTGATCAGGCTTATTGGTCTGATTGTGTTCGCGTTTGTAACATTCGGTGTGTTGCTTCTAATGGAGACGCTGAGTGCCTTCCTCCAT
species | Physcomitrella patens |
transcript | PP1S6_159V6.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: GCACAACTTTCTGCGGTGTTCTATGAGCGAGTCCTCATGTTTGCTTGGGC GTACTCAAACCCAGTGATCAGGCTTATTGGTCTGATTGTGTTCGCGTTTGTEST: gi|162152879|gb|FC328973.1|FC328973
genomic: GCACAACTTTCTGCGGTGTTCTATGAGCGAGTCCTCATGTTTGCTTGGGCgtaagttcca ... caaacgacagGTACTCAAACCCAGTGATCAGGCTTATTGGTCTGATTGTGTTCGCGTTTGT
EST: GCACAACTTTCTGCGGTGTTCTATGAGCGAGTCCTCATGTTTGCTTGGGC GTACTCAAACCCAGTGATCAGGCTTATTGGTCTGATTGTGTTCGCGTTTGTEST: gi|37849887|gb|BJ607895.1|BJ607895
genomic: GCACAACTTTCTGCGGTGTTCTATGAGCGAGTCCTCATGTTTGCTTGGGCgtaagttcca ... caaacgacagGTACTCAAACCCAGTGATCAGGCTTATTGGTCTGATTGTGTTCGCGTTTGT
EST: GCACAACTTTCTGCGGTGTTCTATGAGCGAGTCCTCATGTTTGCTTGGGC GTACTCAAACCCAGTGATCAGGCTTATTGGTCTGATTGTGTTCGCGTTTGTEST: gi|162189972|gb|FC365623.1|FC365623
genomic: GCACAACTTTCTGCGGTGTTCTATGAGCGAGTCCTCATGTTTGCTTGGGCgtaagttcca ... caaacgacagGTACTCAAACCCAGTGATCAGGCTTATTGGTCTGATTGTGTTCGCGTTTGT
EST: GCACAACTTTCTGCGGTGTTCTATGAGCGAGTCCTCATGTTTGCTTGGGC GTACTCAAACCCAGTGATCAGGCTTATTGGTCTGATTGTGTTCGCGTTTGTEST: gi|162156042|gb|FC332209.1|FC332209
genomic: GCACAACTTTCTGCGGTGTTCTATGAGCGAGTCCTCATGTTTGCTTGGGCgtaagttcca ... caaacgacagGTACTCAAACCCAGTGATCAGGCTTATTGGTCTGATTGTGTTCGCGTTTGT
EST: GCACAACTTTCTGCGGTGTTCTATGAGCGAGTCCTCATGTTTGCTTGGGC GTACTCAAACCCAGTGATCAGGCTTATTGGTCTGATTGTGTTCGCGTTTGTEST: gi|162156984|gb|FC333346.1|FC333346
genomic: GCACAACTTTCTGCGGTGTTCTATGAGCGAGTCCTCATGTTTGCTTGGGCgtaagttcca ... caaacgacagGTACTCAAACCCAGTGATCAGGCTTATTGGTCTGATTGTGTTCGCGTTTGT
EST: GCACAACTTTCTGCGGTGTTCTATGAGCGAGTCCTCATGTTTGCTTGGGC GTACTCAAACCCAGTGATCAGGCTTATTGGTCTGATTGTGTTCGCGTTTGTEST: gi|162173249|gb|FC350031.1|FC350031
genomic: GCACAACTTTCTGCGGTGTTCTATGAGCGAGTCCTCATGTTTGCTTGGGCgtaagttcca ... caaacgacagGTACTCAAACCCAGTGATCAGGCTTATTGGTCTGATTGTGTTCGCGTTTGT
EST: GCACAACTTTCTGCGGTGTTCTATGAGCGAGTCCTCATGTTTGCTTGGGC GTACTCAAACCCAGTGATCAGGCTTATTGGTCTGATTGTGTTCGCGTTTGTEST: gi|162192953|gb|FC371455.1|FC371455
genomic: GCACAACTTTCTGCGGTGTTCTATGAGCGAGTCCTCATGTTTGCTTGGGCgtaagttcca ... caaacgacagGTACTCAAACCCAGTGATCAGGCTTATTGGTCTGATTGTGTTCGCGTTTGT
EST: ATGAGCGAGTCCTCATGTTTGCTTGGGC GTACTCAAACCCAGTGATCAGGCTTATTGGTCTGATTGTGTTCGCGTTTGTEST: gi|208368650|gb|DC940029.1|DC940029
genomic: ATGAGCGAGTCCTCATGTTTGCTTGGGCgtaagttcca ... caaacgacagGTACTCAAACCCAGTGATCAGGCTTATTGGTCTGATTGTGTTCGCGTTTGT
EST: GCACAACTTTCTGCGGTGTTCTATGAGCGAGTCCTCATGTTTGCTTGGGC GTACTCAAACCCAGTGATCAGGCTTATTGGTCTGATTGTGTTCGCGTTTGTEST: gi|208372785|gb|DC952672.1|DC952672
genomic: GCACAACTTTCTGCGGTGTTCTATGAGCGAGTCCTCATGTTTGCTTGGGCgtaagttcca ... caaacgacagGTACTCAAACCCAGTGATCAGGCTTATTGGTCTGATTGTGTTCGCGTTTGT
EST: TCCTCATGTTNGC-TNGGC GTACTCAAACCCAGTGATCAGGCTTATTGGTCTGATTGTGTTCGCGTTTGT
genomic: TCCTCATGTTTGCTTGGGCgtaagttcca ... caaacgacagGTACTCAAACCCAGTGATCAGGCTTATTGGTCTGATTGTGTTCGCGTTTGT
tgtctatgcgatttcgtaggtatcaaaggactaatatgcttgttgcaaacgacagGTACTCAAACCCAGTGATCAGGCTTATTGGTCTGATTGTGTTCGCGTTTGTAACATTCGGTGTGTTGCTTCTAATGGAGACGCTGAGTGCCTTCCTCCAT
gactaat putative branch site (score: 19)
actaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgttatataaaaaacgtttcgaattttttggaagttgagatatttgtctatgcgatttcgtaggtatcaaaggactaatatgcttgttgcaaacgacagGTACTCAAACCCAGTGATCAGGCTTATTGGTCTGATTGTGTTCGCGTTTGTAACATTCGGTGTGTTGCTTCTAATGGAGACGCTGAGTGCCTTCCTCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA