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...aatgtcacatagtgtaccatgcctcgagcatgtcacagacagatatgttcgtgaatcggactaaaatactctccattgtggtggatgttgttatcaacagAAACTGCAGGGTAGACATTACACTGCTTTGAGCCGCTCTGATTACTCGTCATCAGATGATGAGGGAACCGGTGAGCATGACGAAGAAGAGTTCGAGTTTG
species | Physcomitrella patens |
transcript | PP1S6_159V6.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ATGCTGTTCCCAAAGCCTTTGCTG-TGCCGAGGGCAGCATATGCAG AAACTGCAGGGTAGACATTACACTGCTTTGAGCCGCTCTGATTACTCGTCAEST: gi|162152879|gb|FC328973.1|FC328973
genomic: ATGCTGTTCCCAAAGCCTTTGCTGTTG-CGAAGGCAGCATATGCAGgtgcaaattc ... ttatcaacagAAACTGCAGGGTAGACATTACACTGCTTTGAGCCGCTCTGATTACTCGTCA
EST: CCTGGATGCTGTTCCCAAAGCCTTTGCTGTTGCGAAGGCAGCATATGCAG AAACTGCAGGGTAGACATTACACTGCTTTGAGCCGCTCTGATTACTCGTCAEST: gi|162156042|gb|FC332209.1|FC332209
genomic: CCTGGATGCTGTTCCCAAAGCCTTTGCTGTTGCGAAGGCAGCATATGCAGgtgcaaattc ... ttatcaacagAAACTGCAGGGTAGACATTACACTGCTTTGAGCCGCTCTGATTACTCGTCA
EST: GCTGTTGCGAAGGCAGCATATGCAG AAACTGCAGGGTAGACATTACACTGCTNTGAGCCGCTCTGATTACTCGTCAEST: gi|162173249|gb|FC350031.1|FC350031
genomic: GCTGTTGCGAAGGCAGCATATGCAGgtgcaaattc ... ttatcaacagAAACTGCAGGGTAGACATTACACTGCTTTGAGCCGCTCTGATTACTCGTCA
EST: TGCGAAGGCAGCATATGCAG AAACTGCAGGGTAGACATTACACTGCTNTGAGCCGCTCTGATTACTCGTCAEST: gi|208368650|gb|DC940029.1|DC940029
genomic: TGCGAAGGCAGCATATGCAGgtgcaaattc ... ttatcaacagAAACTGCAGGGTAGACATTACACTGCTTTGAGCCGCTCTGATTACTCGTCA
EST: CCTGGATGCTGTTCCCAAAGCCTTTGCTGTTGCGAAGGCAGCATATGCAG AAACTGCAGGGTAGACATTACACTGCTTTGAGCCGCTCTGATTACTCGTCA
genomic: CCTGGATGCTGTTCCCAAAGCCTTTGCTGTTGCGAAGGCAGCATATGCAGgtgcaaattc ... ttatcaacagAAACTGCAGGGTAGACATTACACTGCTTTGAGCCGCTCTGATTACTCGTCA
tgttcgtgaatcggactaaaatactctccattgtggtggatgttgttatcaacagAAACTGCAGGGTAGACATTACACTGCTTTGAGCCGCTCTGATTACTCGTCATCAGATGATGAGGGAACCGGTGAGCATGACGAAGAAGAGTTCGAGTTTG
gactaaa putative branch site (score: 2)
actaaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatgtcacatagtgtaccatgcctcgagcatgtcacagacagatatgttcgtgaatcggactaaaatactctccattgtggtggatgttgttatcaacagAAACTGCAGGGTAGACATTACACTGCTTTGAGCCGCTCTGATTACTCGTCATCAGATGATGAGGGAACCGGTGAGCATGACGAAGAAGAGTTCGAGTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG