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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttttggtcagaatcactgcattgaaatttgagcttcatgctggggtgcttttttttgccatctattggatatcttgaatttactggtgaccaggttacgaggctgtcattctggatttgaagtaaaattcatatggttttaagttctaatagtcaagtaacgcattgcagGTGGGACTGGAGAGATCATCAATGCAATCTATATTCCATGTACAACACTACTGTGTTTGTGATAATCACGTGATTTGGGACGCAGAATTTGAGGACATGA

Basic information

species Physcomitrella patens
transcript PP1S6_153V6.1
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37826458|gb|BJ584470.1|BJ584470
EST:     GAACACCTGAAATGCTCCGCCGTGAAGATTCCATTTTTACTCTAAGTGTT                         GTGGGACTGGAGAGATCATCAATGCAATCTATATTCCATGTACAACACTAC
genomic: GAACACCTGAAATGCTCCGCCGTGAAGATTCCATTTTTACTCTAAGTGTTgtaagttttg ... cgcattgcagGTGGGACTGGAGAGATCATCAATGCAATCTATATTCCATGTACAACACTAC
EST: gi|162245577|gb|FC424118.1|FC424118
EST:     GAACACCTGAAATGCTCCGCCGTGAAGATTCCATTTTTACTCTAAGTGTT                         GTGGGACTGGAGAGATCATCAATGCAATCTATATTCCATGTACAACACTAC
genomic: GAACACCTGAAATGCTCCGCCGTGAAGATTCCATTTTTACTCTAAGTGTTgtaagttttg ... cgcattgcagGTGGGACTGGAGAGATCATCAATGCAATCTATATTCCATGTACAACACTAC
EST: gi|162245578|gb|FC424119.1|FC424119
EST:     GAACACCTGAAATGCTCCGCCGTGAAGATTCCATTTTTACTCTAAGTGTT                         GTGGGACTGGAGAGATCATCAATGCAATCTATATTCCATGTACAACACTAC
genomic: GAACACCTGAAATGCTCCGCCGTGAAGATTCCATTTTTACTCTAAGTGTTgtaagttttg ... cgcattgcagGTGGGACTGGAGAGATCATCAATGCAATCTATATTCCATGTACAACACTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttgaagtaaaattcatatggttttaagttctaatagtcaagtaacgcattgcagGTGGGACTGGAGAGATCATCAATGCAATCTATATTCCATGTACAACACTACTGTGTTTGTGATAATCACGTGATTTGGGACGCAGAATTTGAGGACATGA
                                       aagtaac  putative branch site (score: 2)
                     ttttaagttctaata  TA-rich tract