1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaatcacagcttagtttagtagtttcttcatgtgttgtcgcctatgagctactgatgtattttatgttaatgatgcacaaatgcgtttggagaacaccaattgattcctgtgcgttgcagTGTTTGCAAGGTTGTCGCAGCCTTCACAACCAGTAAGATGTTCGACAGTAGCATTAGTATGCCCATCTCTTGCTCAGCGTAAACGGAGGGTGGATAGCTC
species | Physcomitrella patens |
transcript | PP1S6_153V6.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGTCAACGCACTTTTCGCTCAGCTCATCTTCGTGTTTCTTAGTGGTGCAG TGTTTGCAAGGTTGTCGCAGCCTTCACAACCAGTAAGATGTTCGACAGTAGEST: gi|162245577|gb|FC424118.1|FC424118
genomic: CGTCAACGCACTTTTCGCTCAGCTCATCTTCGTGTTTCTTAGTGGTGCAGgtaatcacag ... tgcgttgcagTGTTTGCAAGGTTGTCGCAGCCTTCACAACCAGTAAGATGTTCGACAGTAG
EST: CGTCAACGCACTTTTCGCTCAGCTCATCTTCGTGTTTCTTAGTGGTGCAG TGTTTGCAAGGTTGTCGCAGCCTTCACAACCAGTAAGATGTTCGACAGTAGEST: gi|162245578|gb|FC424119.1|FC424119
genomic: CGTCAACGCACTTTTCGCTCAGCTCATCTTCGTGTTTCTTAGTGGTGCAGgtaatcacag ... tgcgttgcagTGTTTGCAAGGTTGTCGCAGCCTTCACAACCAGTAAGATGTTCGACAGTAG
EST: CGTCAACGCACTTTTCGCTCAGCTCATCTTCGTGTTTCTTAGTGGTGCAG TGTTTGCAAGGTTGTCGCAGCCTTCACAACCAGTAAGATGTTCGACAGTAG
genomic: CGTCAACGCACTTTTCGCTCAGCTCATCTTCGTGTTTCTTAGTGGTGCAGgtaatcacag ... tgcgttgcagTGTTTGCAAGGTTGTCGCAGCCTTCACAACCAGTAAGATGTTCGACAGTAG
gttaatgatgcacaaatgcgtttggagaacaccaattgattcctgtgcgttgcagTGTTTGCAAGGTTGTCGCAGCCTTCACAACCAGTAAGATGTTCGACAGTAGCATTAGTATGCCCATCTCTTGCTCAGCGTAAACGGAGGGTGGATAGCTC
ttcctgt CT-rich tract
aattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatcacagcttagtttagtagtttcttcatgtgttgtcgcctatgagctactgatgtattttatgttaatgatgcacaaatgcgtttggagaacaccaattgattcctgtgcgttgcagTGTTTGCAAGGTTGTCGCAGCCTTCACAACCAGTAAGATGTTCGACAGTAGCATTAGTATGCCCATCTCTTGCTCAGCGTAAACGGAGGGTGGATAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA