1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...ttttttgaacttatttcaattatacaattttacaaaagtagatgctagcatgtaaatgttcctgaaaatcgctcatacgctttctcttgatccattgcagAGTTTTGATGGCAAGGTATGTTTTGGCTGGGCCTCAACCCTGTGAACTTGTTGATGTCAAAGTTGACTTGACTTACAAGTACAACACTTTAACAAGATCT
species | Physcomitrella patens |
transcript | PP1S6_153V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TGCCCATCTCTTGCTCAGCGTAAACGGAGGGTGGATAGCTCAGCCACCAA AGTTTTGATGGCAAGGTATGTTTTGGCTGGGCCTCAACCCTGTGAACTTGTEST: gi|162245577|gb|FC424118.1|FC424118
genomic: TGCCCATCTCTTGCTCAGCGTAAACGGAGGGTGGATAGCTCAGCCACCAAgtaaggactt ... tccattgcagAGTTTTGATGGCAAGGTATGTTTTGGCTGGGCCTCAACCCTGTGAACTTGT
EST: TGCCCATCTCTTGCTCAGCGTAAACGGAGGGTGGATAGCTCAGCCACCAA AGTTTTGATGGCAAGGTATGTTTTGGCTGGGCCTCAACCCTGTGAACTTGTEST: gi|162245578|gb|FC424119.1|FC424119
genomic: TGCCCATCTCTTGCTCAGCGTAAACGGAGGGTGGATAGCTCAGCCACCAAgtaaggactt ... tccattgcagAGTTTTGATGGCAAGGTATGTTTTGGCTGGGCCTCAACCCTGTGAACTTGT
EST: TGCCCATCTCTTGCTCAGCGTAAACGGAGGGTGGATAGCTCAGCCACCAA AGTTTTGATGGCAAGGTATGTTTTGGCTGGGCCTCAACCCTGTGAACTTGT
genomic: TGCCCATCTCTTGCTCAGCGTAAACGGAGGGTGGATAGCTCAGCCACCAAgtaaggactt ... tccattgcagAGTTTTGATGGCAAGGTATGTTTTGGCTGGGCCTCAACCCTGTGAACTTGT
tagcatgtaaatgttcctgaaaatcgctcatacgctttctcttgatccattgcagAGTTTTGATGGCAAGGTATGTTTTGGCTGGGCCTCAACCCTGTGAACTTGTTGATGTCAAAGTTGACTTGACTTACAAGTACAACACTTTAACAAGATCT
tcttgat putative branch site (score: 18)
ctttctcttgatcc CT-rich tract
taaatgtt TA-rich tract