1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
ATCCCAAGTTGCAGCAGCTGCAGAACTAGAGAGCGGCCATAGCTCAAGTGTGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTGgtatgctactgctttggctttgttgcctctttttctccatttagttcgacctggtactgctgttcacttggttcggggagtctctattacattatagttcactttgctcagatttggtaaatggaactctctgtgatgcag
species | Physcomitrella patens |
transcript | PP1S6_143V6.1 |
intron # | 22 |
splice site | 5' |
intron type | U2 |
EST: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTG GAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCAEST: gi|100403661|gb|BY955038.1|BY955038
genomic: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTGgtatgctact ... tgtgatgcagGAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCA
EST: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTG GAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCAEST: gi|162199947|gb|FC376214.1|FC376214
genomic: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTGgtatgctact ... tgtgatgcagGAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCA
EST: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTG GAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCAEST: gi|18341296|gb|BJ173331.1|BJ173331
genomic: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTGgtatgctact ... tgtgatgcagGAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCA
EST: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTG GAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGTCCTATTGAAGTGCCAEST: gi|162174612|gb|FC350267.1|FC350267
genomic: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTGgtatgctact ... tgtgatgcagGAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCA
EST: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTG GAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCAEST: gi|162209443|gb|FC386076.1|FC386076
genomic: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTGgtatgctact ... tgtgatgcagGAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCA
EST: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTG GAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCAEST: gi|162201649|gb|FC378285.1|FC378285
genomic: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTGgtatgctact ... tgtgatgcagGAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCA
EST: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTG GAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCAEST: gi|162199946|gb|FC376213.1|FC376213
genomic: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTGgtatgctact ... tgtgatgcagGAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCA
EST: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTG GAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCAEST: gi|37846501|gb|BJ604509.1|BJ604509
genomic: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTGgtatgctact ... tgtgatgcagGAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCA
EST: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTNTGAAAGAGGAGTACTTG GAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCAEST: gi|162156572|gb|FC332180.1|FC332180
genomic: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTGgtatgctact ... tgtgatgcagGAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCA
EST: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTG GAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCAEST: gi|162197261|gb|FC372548.1|FC372548
genomic: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTGgtatgctact ... tgtgatgcagGAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCA
EST: GCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTG GAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCAEST: gi|162258203|gb|FC434602.1|FC434602
genomic: GCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTGgtatgctact ... tgtgatgcagGAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCA
EST: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTG GAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCAEST: gi|162264669|gb|FC441667.1|FC441667
genomic: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTGgtatgctact ... tgtgatgcagGAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCA
EST: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTG GAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCAEST: gi|162168699|gb|FC343961.1|FC343961
genomic: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTGgtatgctact ... tgtgatgcagGAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCA
EST: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTG GAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCA
genomic: TGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTGgtatgctact ... tgtgatgcagGAGGAGCAACCTACATGTTCAACTCCCAGGAGAAGACCTATTGAAGTGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCCAAGTTGCAGCAGCTGCAGAACTAGAGAGCGGCCATAGCTCAAGTGTGTCTGCCGTCCAAAAGCACGCCGATCACGTTCTGAAAGAGGAGTACTTGgtatgctactgctttggctttgttgcctctttttctccatttagttcgacctggtactgctgttcacttggttcggggagtctctattacattatagttcactttgctcagatttggtaaatggaactctctgtgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG