1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
AAGCGCCATAGCAGATGCACAGAGTGTGCTTAATGAATTACAAGAGAATATCGCTACTCAAGGTCAAGAAGTAGCTAGTTTTGCCCAACAACAACGTGAAgtaagtatcccgcagtccttggttctactctctttgctcgtggcacttcctttttaaaaagaagtcaatttattttattgttttacttatcatttatttatatcgcgattttctgaaatctatttcctgtctcag
species | Physcomitrella patens |
transcript | PP1S6_143V6.1 |
intron # | 16 |
splice site | 5' |
intron type | U2 |
EST: TCGCTACTCAAGGTCAAGAAGTAGCTAGTTTTGCCCAACAACAACGTGAA GCAGCGCGAAGGAGCCTGGAAGCAGCACGCGATATCACTCAGGTAGTGACAEST: gi|162209444|gb|FC386077.1|FC386077
genomic: TCGCTACTCAAGGTCAAGAAGTAGCTAGTTTTGCCCAACAACAACGTGAAgtaagtatcc ... cctgtctcagGCAGCGCGAAGGAGCCTGGAAGCAGCACGCGATATCACTCAGGTAGTGACA
EST: TCGCTACTCAAGGTCAAGAAGTAGCTAGTTTTGCCCAACAACAACGTGAA GCAGCGCGAAGGAGCCTGGAAGCAGCACGCGATATCACTCAGGTAGTGACAEST: gi|7067430|gb|AW497285.1|AW497285
genomic: TCGCTACTCAAGGTCAAGAAGTAGCTAGTTTTGCCCAACAACAACGTGAAgtaagtatcc ... cctgtctcagGCAGCGCGAAGGAGCCTGGAAGCAGCACGCGATATCACTCAGGTAGTGACA
EST: TCGCTACTCAAGGTCAAGAAGTAGCTAGTTTTGCCCAACAACAACGTGAA GCAGCGCGAAGGAGCCTGGAAGCAGCACGCGATATCACTCAGGTAGTGACAEST: gi|162161168|gb|FC336516.1|FC336516
genomic: TCGCTACTCAAGGTCAAGAAGTAGCTAGTTTTGCCCAACAACAACGTGAAgtaagtatcc ... cctgtctcagGCAGCGCGAAGGAGCCTGGAAGCAGCACGCGATATCACTCAGGTAGTGACA
EST: TCGCTACTCAAGGTCAAGAAGTAGCTAGTTTTGCCCAACAACAACGTGAA GCAGCGCGAAGGAGCCTGGAAGCAGCACGCGATATCACTCAGGTAGTGACAEST: gi|162156573|gb|FC332181.1|FC332181
genomic: TCGCTACTCAAGGTCAAGAAGTAGCTAGTTTTGCCCAACAACAACGTGAAgtaagtatcc ... cctgtctcagGCAGCGCGAAGGAGCCTGGAAGCAGCACGCGATATCACTCAGGTAGTGACA
EST: TCGCTACTCAAGGTCAAGAAGTAGCTAGTTTTGCCCAACAACAACGTGAA GCAGCGCGAAGGAGCCTGGAAGCAGCACGCGATATCACTCAGGTAGTGACAEST: gi|162258204|gb|FC434603.1|FC434603
genomic: TCGCTACTCAAGGTCAAGAAGTAGCTAGTTTTGCCCAACAACAACGTGAAgtaagtatcc ... cctgtctcagGCAGCGCGAAGGAGCCTGGAAGCAGCACGCGATATCACTCAGGTAGTGACA
EST: TCGCTACTCAAGGTCAAGAAGTAGCTAGTTTTGCCCAACAACAACGTGAA GCAGCGCGAAGGAGCCTGGAAGCAGCACGCGATATCACTCAGGTAGTGACA
genomic: TCGCTACTCAAGGTCAAGAAGTAGCTAGTTTTGCCCAACAACAACGTGAAgtaagtatcc ... cctgtctcagGCAGCGCGAAGGAGCCTGGAAGCAGCACGCGATATCACTCAGGTAGTGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGCGCCATAGCAGATGCACAGAGTGTGCTTAATGAATTACAAGAGAATATCGCTACTCAAGGTCAAGAAGTAGCTAGTTTTGCCCAACAACAACGTGAAgtaagtatcccgcagtccttggttctactctctttgctcgtggcacttcctttttaaaaagaagtcaatttattttattgttttacttatcatttatttatatcgcgattttctgaaatctatttcctgtctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT