1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' |
CAAGCGAACGCGAATCTTTTGGTCAACATTCAAGGACAGGAGGATGCTGCGCTGATGGAGATCGAGACTGAGAACAATTACACAGTTACTTTTGTAAACGgtattcccgcatgccatgaatttgagttatcttctctgaggattatgttaaatagttatctcattcccaagctaatcagaaggatagcagcattccaccaaatttgatacttggacatagaaccgttttaattagaattaattagagatctagtgactaattgtacagtttccttctgattattctcag
species | Physcomitrella patens |
transcript | PP1S6_143V6.1 |
intron # | 21 |
splice site | 5' |
intron type | U2 |
EST: GCTGATGGAGATCGAGACTGAGAACAATTACACAGTTACTTTTGTAAACG AAACCTGTGCTGGAGAGGCTGAAGCAGCTGCAAGAATGCAGTCAACGATGGEST: gi|7046875|gb|AW476819.1|AW476819
genomic: GCTGATGGAGATCGAGACTGAGAACAATTACACAGTTACTTTTGTAAACGgtattcccgc ... ttattctcagAAACCTGTGCTGGAGAGGCTGAAGCAGCTGCAAGAATGCAGTCAACGATGG
EST: GCTGATGGAGATCGAGACTGAGAACAATTACACAGTTACTTTTGTAAACG AAACCTGTGCTGGAGAGGCTGAAGCAGCTGCAAGAATGCAGTCAACGATGGEST: gi|162264669|gb|FC441667.1|FC441667
genomic: GCTGATGGAGATCGAGACTGAGAACAATTACACAGTTACTTTTGTAAACGgtattcccgc ... ttattctcagAAACCTGTGCTGGAGAGGCTGAAGCAGCTGCAAGAATGCAGTCAACGATGG
EST: GCTGATGGAGATCGAGACTGAGAACAATTACACAGTTACTTTTGTAAACG AAACCTGTGCTGGAGAGGCTGAAGCAGCTGCAAGAATGCAGTCAACGATGGEST: gi|162168699|gb|FC343961.1|FC343961
genomic: GCTGATGGAGATCGAGACTGAGAACAATTACACAGTTACTTTTGTAAACGgtattcccgc ... ttattctcagAAACCTGTGCTGGAGAGGCTGAAGCAGCTGCAAGAATGCAGTCAACGATGG
EST: GCTGATGGAGATCGAGACTGAGAACAATTACACAGTTACTTTTGTAAACG AAACCTGTGCTGGAGAGGCTGAAGCAGCTGCAAGAATGCAGTCAACGATGG
genomic: GCTGATGGAGATCGAGACTGAGAACAATTACACAGTTACTTTTGTAAACGgtattcccgc ... ttattctcagAAACCTGTGCTGGAGAGGCTGAAGCAGCTGCAAGAATGCAGTCAACGATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGCGAACGCGAATCTTTTGGTCAACATTCAAGGACAGGAGGATGCTGCGCTGATGGAGATCGAGACTGAGAACAATTACACAGTTACTTTTGTAAACGgtattcccgcatgccatgaatttgagttatcttctctgaggattatgttaaatagttatctcattcccaagctaatcagaaggatagcagcattccaccaaatttgatacttggacatagaaccgttttaattagaattaattagagatctagtgactaattgtacagtttccttctgattattctcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC