1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtacagttttctctctctacatcaaccttgttctggaaattctgcttcgaataacacggattcatgctattaacttttattcattgatctgtcacagACTGCGTTCACAACTCAGAAAGACTTCGGAAAGGAAGCTCGTGAAGCTCAGTGGGCTCTCGCTCAGCGAACCTTGCATGGACTACATCCTCCTGAATCCA
species | Physcomitrella patens |
transcript | PP1S6_11V6.1 |
intron # | 16 |
splice site | 3' |
intron type | U2 |
EST: TCCGCTACATTCAAAGTGGAAAGGCTTGGGATAATCTTATCAACAGAAAG ACTGCGTTCACAACTCAGAAAGACTTCGGAAAGGAAGCTCGTGAAGCTCAGEST: gi|162168957|gb|FC345639.1|FC345639
genomic: TCCGCTACATTCAAAGTGGAAAGGCTTGGGATAATCTTATCAACAGAAAGgtacagtttt ... tctgtcacagACTGCGTTCACAACTCAGAAAGACTTCGGAAAGGAAGCTCGTGAAGCTCAG
EST: ATCAACAGAAAG ACTGCGTTCACAACTCAGAAAGACTTCGGAAAGGAAGCTCGTGAAGCTCAGEST: gi|162259297|gb|FC435681.1|FC435681
genomic: ATCAACAGAAAGgtacagtttt ... tctgtcacagACTGCGTTCACAACTCAGAAAGACTTCGGAAAGGAAGCTCGTGAAGCTCAG
EST: AAAGTGGAAAGGCTGGGGATAATCTTATCAACAGAAAG ACTGCGTTCACAACTCAGAAAGACTTCGGAAAGGAAGCTCGTGAAGCTCAGEST: gi|162193950|gb|FC371763.1|FC371763
genomic: AAAGTGGAAAGGCTTGGGATAATCTTATCAACAGAAAGgtacagtttt ... tctgtcacagACTGCGTTCACAACTCAGAAAGACTTCGGAAAGGAAGCTCGTGAAGCTCAG
EST: TCCGCTACATTCAAAGTGGAAAGGCTTGGGATAATCTTATCAACAGAAAG ACTGCGTTCACAACTCAGAAAGACTTCGGAAAGGAAGCTCGTGAAGCTCAGEST: gi|162252634|gb|FC428665.1|FC428665
genomic: TCCGCTACATTCAAAGTGGAAAGGCTTGGGATAATCTTATCAACAGAAAGgtacagtttt ... tctgtcacagACTGCGTTCACAACTCAGAAAGACTTCGGAAAGGAAGCTCGTGAAGCTCAG
EST: TCCGCTACATTCAAAGTGGAAAGGCTTGGGATAATCTTATCAACAGAAAG ACTGCGTTCACAACTCAGAAAGACTTCGGAAAGGAAGCTCGTGAAGCTCAGEST: gi|162164471|gb|FC341584.1|FC341584
genomic: TCCGCTACATTCAAAGTGGAAAGGCTTGGGATAATCTTATCAACAGAAAGgtacagtttt ... tctgtcacagACTGCGTTCACAACTCAGAAAGACTTCGGAAAGGAAGCTCGTGAAGCTCAG
EST: TCCGCTACATTCAAAGTGGAAAGGCTTGGGATAATCTTATCAACAGAAAG ACTGCGTTCACAACTCAGAAAGACTTCGGAAAGGAAGCTCGTGAAGCTCAGEST: gi|162185797|gb|FC362353.1|FC362353
genomic: TCCGCTACATTCAAAGTGGAAAGGCTTGGGATAATCTTATCAACAGAAAGgtacagtttt ... tctgtcacagACTGCGTTCACAACTCAGAAAGACTTCGGAAAGGAAGCTCGTGAAGCTCAG
EST: TCCGCTACATTCAAAGTGGAAAGGCTTGGGATAATCTTATCAACAGAAAG ACTGCGTTCACAACTCAGAAAGACTTCGGAAAGGAAGCTCGTGAAGCTCAGEST: gi|162157211|gb|FC332845.1|FC332845
genomic: TCCGCTACATTCAAAGTGGAAAGGCTTGGGATAATCTTATCAACAGAAAGgtacagtttt ... tctgtcacagACTGCGTTCACAACTCAGAAAGACTTCGGAAAGGAAGCTCGTGAAGCTCAG
EST: TCCGCTACATTCAAAGTGGAAAGGCTTGGGATAATCTTATCAACAGAAAG ACTGCGTTCACAACTCAGAAAGACTTCGGAAAGGAAGCTCGTGAAGCTCAGEST: gi|162176072|gb|FC351866.1|FC351866
genomic: TCCGCTACATTCAAAGTGGAAAGGCTTGGGATAATCTTATCAACAGAAAGgtacagtttt ... tctgtcacagACTGCGTTCACAACTCAGAAAGACTTCGGAAAGGAAGCTCGTGAAGCTCAG
EST: TCCGCTACATTCAAAGTGGAAAGGCTTGGGATAATCTTATCAACAGAAAG ACTGCGTTCACAACTCAGAAAGACTTCGGAAAGGAAGCTCGTGAAGCTCEST: gi|162156918|gb|FC333072.1|FC333072
genomic: TCCGCTACATTCAAAGTGGAAAGGCTTGGGATAATCTTATCAACAGAAAGgtacagtttt ... tctgtcacagACTGCGTTCACAACTCAGAAAGACTTCGGAAAGGAAGCTCGTGAAGCTC
EST: GGATAATCTTATCAACAGAAAG ACTGCGTTCACAACTCAGAAAGACTTCGGAAAGGAAGCTCGTGAAGCTCAG
genomic: GGATAATCTTATCAACAGAAAGgtacagtttt ... tctgtcacagACTGCGTTCACAACTCAGAAAGACTTCGGAAAGGAAGCTCGTGAAGCTCAG
tgcttcgaataacacggattcatgctattaacttttattcattgatctgtcacagACTGCGTTCACAACTCAGAAAGACTTCGGAAAGGAAGCTCGTGAAGCTCAGTGGGCTCTCGCTCAGCGAACCTTGCATGGACTACATCCTCCTGAATCCA
tattaacttttattca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagttttctctctctacatcaaccttgttctggaaattctgcttcgaataacacggattcatgctattaacttttattcattgatctgtcacagACTGCGTTCACAACTCAGAAAGACTTCGGAAAGGAAGCTCGTGAAGCTCAGTGGGCTCTCGCTCAGCGAACCTTGCATGGACTACATCCTCCTGAATCCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA