1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TTTCTTGGGTTGTTGCCTCTTTTCGATCCACCCCGGCATGACAGTGCTGAGACCATCCGGCGAGCTCTCAACTTGGGAGTTAGCGTGAAGATGATTACAGgtatacttaacctctggatggaaaatgtcacgatctttagcgtctgttctttcagcatactcagcggtcgtggctggtgttgagggatgtaatatacttacatgctgctatcgtggactaatgtgtaacatttgacctcag
species | Physcomitrella patens |
transcript | PP1S6_11V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTCTCAACTTGGGAGTTAGCGTGAAGATGATTACAG GTGATCAGCTTGCGATTGGAAAAGAGACAGGTCGGCGGTTAGGCATGGGGAEST: gi|162174468|gb|FC350747.1|FC350747
genomic: CTCTCAACTTGGGAGTTAGCGTGAAGATGATTACAGgtatacttaa ... ttgacctcagGTGATCAGCTTGCGATTGGAAAAGAGACAGGTCGGCGGTTAGGCATGGGGA
EST: GACCATCCGGCGAGCTCTCAACTTGGGAGTTAGCGTGAAGATGATTACAG GTGATCAGCTTGCGATTGGAAAAGAGACAGGTCGGCGGTTAGGCATGGGGAEST: gi|162252827|gb|FC428858.1|FC428858
genomic: GACCATCCGGCGAGCTCTCAACTTGGGAGTTAGCGTGAAGATGATTACAGgtatacttaa ... ttgacctcagGTGATCAGCTTGCGATTGGAAAAGAGACAGGTCGGCGGTTAGGCATGGGGA
EST: GTTAGCGTGAAGATGATTACAG GTGATCAGCTTGCGATTGGAAAAGAGACAGGTCGGCGGTTAGGCATGGGGAEST: gi|100379616|gb|BY949858.1|BY949858
genomic: GTTAGCGTGAAGATGATTACAGgtatacttaa ... ttgacctcagGTGATCAGCTTGCGATTGGAAAAGAGACAGGTCGGCGGTTAGGCATGGGGA
EST: GACCATCCGGCGAGCTCTCAACTTGGGAGTTAGCGTGAAGATGATTACAG GTGATCAGCTTGCGATTGGAAAAGAGACAGGTCGGCGGTTAGGCATGGGGAEST: gi|162186679|gb|FC363651.1|FC363651
genomic: GACCATCCGGCGAGCTCTCAACTTGGGAGTTAGCGTGAAGATGATTACAGgtatacttaa ... ttgacctcagGTGATCAGCTTGCGATTGGAAAAGAGACAGGTCGGCGGTTAGGCATGGGGA
EST: GACCATCCGGCGAGCTCTCAACTTGGGAGTTAGCGTGAAGATGATTACAG GTGATCAGCTTGCGATTGGAAAAGAGACAGGTCGGCGGTTAGGCATGGGGAEST: gi|162159442|gb|FC336231.1|FC336231
genomic: GACCATCCGGCGAGCTCTCAACTTGGGAGTTAGCGTGAAGATGATTACAGgtatacttaa ... ttgacctcagGTGATCAGCTTGCGATTGGAAAAGAGACAGGTCGGCGGTTAGGCATGGGGA
EST: GACCATCCGGCGAGCTCTCAACTTGGGAGTTAGCGTGAAGATGATTACAG GTGATCAGCTTGCGATTGGAAAAGAGACAGGTCGGCGGTTAGGCATGGGGAEST: gi|162178407|gb|FC354131.1|FC354131
genomic: GACCATCCGGCGAGCTCTCAACTTGGGAGTTAGCGTGAAGATGATTACAGgtatacttaa ... ttgacctcagGTGATCAGCTTGCGATTGGAAAAGAGACAGGTCGGCGGTTAGGCATGGGGA
EST: GACCATCCGGCGAGCTCTCAACTTGGGAGTTAGCGTGAAGATGATTACAG GTGATCAGCTTGCGATTGGAAAAGAGACAGGTCGGCGGTTAGGCATGGGGAEST: gi|162198177|gb|FC375480.1|FC375480
genomic: GACCATCCGGCGAGCTCTCAACTTGGGAGTTAGCGTGAAGATGATTACAGgtatacttaa ... ttgacctcagGTGATCAGCTTGCGATTGGAAAAGAGACAGGTCGGCGGTTAGGCATGGGGA
EST: GATGATTACAG GTGATCAGCTTGCGATTGGAAAAGAGACAGGTCGGCGGTTAGGCATGGGGAEST: gi|162197978|gb|FC373993.1|FC373993
genomic: GATGATTACAGgtatacttaa ... ttgacctcagGTGATCAGCTTGCGATTGGAAAAGAGACAGGTCGGCGGTTAGGCATGGGGA
EST: GACCATCCGGCGAGCTCTCAACTTGGGAGTTAGCGTGAAGATGATTACAG GTGATCAGCTTGCGATTGGAAAAGAGACAGGTCGGCGGTTAGGCATGGGGAEST: gi|162153187|gb|FC329593.1|FC329593
genomic: GACCATCCGGCGAGCTCTCAACTTGGGAGTTAGCGTGAAGATGATTACAGgtatacttaa ... ttgacctcagGTGATCAGCTTGCGATTGGAAAAGAGACAGGTCGGCGGTTAGGCATGGGGA
EST: GACCATCCGGCGAGCTCTCAACTTGGGAGTTAGCGTGAAGATGATTACAG GTGATCAGCTTGCGATTGGAAAAGAGACAGGTCGGCGGTTAGGCATGGGGAEST: gi|162163564|gb|FC339474.1|FC339474
genomic: GACCATCCGGCGAGCTCTCAACTTGGGAGTTAGCGTGAAGATGATTACAGgtatacttaa ... ttgacctcagGTGATCAGCTTGCGATTGGAAAAGAGACAGGTCGGCGGTTAGGCATGGGGA
EST: CGTGAAGATGATTACAG GTGATCAGCTTGCGATTGGAAAAGAGACAGGTCGGCGGTTAGGCATGGGGA
genomic: CGTGAAGATGATTACAGgtatacttaa ... ttgacctcagGTGATCAGCTTGCGATTGGAAAAGAGACAGGTCGGCGGTTAGGCATGGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTCTTGGGTTGTTGCCTCTTTTCGATCCACCCCGGCATGACAGTGCTGAGACCATCCGGCGAGCTCTCAACTTGGGAGTTAGCGTGAAGATGATTACAGgtatacttaacctctggatggaaaatgtcacgatctttagcgtctgttctttcagcatactcagcggtcgtggctggtgttgagggatgtaatatacttacatgctgctatcgtggactaatgtgtaacatttgacctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG