1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCCTTTGCAAGAAGCAGAAAACATAATTTACCAGCAGAATTACCAATTGACGATTGACGAAGAACTTAAGACGGTTCTACATGAAGCTGTAGCGAAGAAGgtaagctttatctggatccacttctactcctcacttcattaccttattcgttcttgttttccccttaaatcccccccatttagatgtataaggttgcgcgagtgcag
species | Physcomitrella patens |
transcript | PP1S62_204V6.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGATTGACGAAGAACTTAAGACGGTTCTACATGAAGCTGTAGCGAAGAAG ATTGTCGTGGTCTTCAAGGTCTACTGGGGCGACGCTAAGGAGAAGCTCTGCEST: gi|67692818|gb|BJ953051.1|BJ953051
genomic: CGATTGACGAAGAACTTAAGACGGTTCTACATGAAGCTGTAGCGAAGAAGgtaagcttta ... gcgagtgcagATTGTCGTGGTCTTCAAGGTCTACTGGGGCGACGCTAAGGAGAAGCTCTGC
EST: CGATTGACGAAGAACTTAAGACGGTTCTACATGAAGCTGTAGCGAAGAAG ATTGTCGTGGTCTTCAAGGTCTACTGGGGCGACGCTAAGGAGAAGCTCTGCEST: gi|15261345|gb|BI436655.1|BI436655
genomic: CGATTGACGAAGAACTTAAGACGGTTCTACATGAAGCTGTAGCGAAGAAGgtaagcttta ... gcgagtgcagATTGTCGTGGTCTTCAAGGTCTACTGGGGCGACGCTAAGGAGAAGCTCTGC
EST: TTAAGACGGTTCTACATGAAGCTGTAGCGAAGAAG A-TGTCGTGGTCTTCAAGGTCTACTGGGGCGACGCTAAGGAGAAGCTCTGCEST: gi|162218004|gb|FC393688.1|FC393688
genomic: TTAAGACGGTTCTACATGAAGCTGTAGCGAAGAAGgtaagcttta ... gcgagtgcagATTGTCGTGGTCTTCAAGGTCTACTGGGGCGACGCTAAGGAGAAGCTCTGC
EST: CGATTGACGAAGAACTTAAGACGGTTCTACATGAAGCTGTAGCGAAGAAG ATTGTCGTGGTCTTCAAGGTCTACTGGGGCGACGCTAAGGAGAAGCTTTGCEST: gi|162247295|gb|FC421416.1|FC421416
genomic: CGATTGACGAAGAACTTAAGACGGTTCTACATGAAGCTGTAGCGAAGAAGgtaagcttta ... gcgagtgcagATTGTCGTGGTCTTCAAGGTCTACTGGGGCGACGCTAAGGAGAAGCTCTGC
EST: CGATTGACGAAGAACTTAAGACGGTTCTACATGAAGCTGTAGCGAAGAAG ATTGTCGTGGTCTTCAAGGTCTACTGGGGCGACGCTAAGGAGAAGCTCTGCEST: gi|67569550|gb|BJ942374.1|BJ942374
genomic: CGATTGACGAAGAACTTAAGACGGTTCTACATGAAGCTGTAGCGAAGAAGgtaagcttta ... gcgagtgcagATTGTCGTGGTCTTCAAGGTCTACTGGGGCGACGCTAAGGAGAAGCTCTGC
EST: CGATTGACGAAGAACTTAAGACGGTTCTACATGAAGCTGTAGCGAAGAAG ATTGTCGTGGTCTTCAAGGTCTACTGGGGCGACGCTAEST: gi|162218005|gb|FC393689.1|FC393689
genomic: CGATTGACGAAGAACTTAAGACGGTTCTACATGAAGCTGTAGCGAAGAAGgtaagcttta ... gcgagtgcagATTGTCGTGGTCTTCAAGGTCTACTGGGGCGACGCTA
EST: CGATTGACGAAGAACTTAAGACGGTTCTACATGAAGCTGTAGCGAAGAAG ATTGTCGTGGTCTTCAAGGTCTACTGGGGCGACGCTAAGGAGAAGCTCTGCEST: gi|162237708|gb|FC413323.1|FC413323
genomic: CGATTGACGAAGAACTTAAGACGGTTCTACATGAAGCTGTAGCGAAGAAGgtaagcttta ... gcgagtgcagATTGTCGTGGTCTTCAAGGTCTACTGGGGCGACGCTAAGGAGAAGCTCTGC
EST: CGATTGACGAAGAACTTAAGACGGTTCTACATGAAGCTGTAGCGAAGAAG ATTGTCGTGGTCTTCAAGGTCTACTGGGGCGACGCTAAGGAGAAGCTCTGC
genomic: CGATTGACGAAGAACTTAAGACGGTTCTACATGAAGCTGTAGCGAAGAAGgtaagcttta ... gcgagtgcagATTGTCGTGGTCTTCAAGGTCTACTGGGGCGACGCTAAGGAGAAGCTCTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTTTGCAAGAAGCAGAAAACATAATTTACCAGCAGAATTACCAATTGACGATTGACGAAGAACTTAAGACGGTTCTACATGAAGCTGTAGCGAAGAAGgtaagctttatctggatccacttctactcctcacttcattaccttattcgttcttgttttccccttaaatcccccccatttagatgtataaggttgcgcgagtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG