1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGCTTTTGTTTTGAGTGTTAAGACTCGAGAGCAACGTTTGTTGGGAGAACACTCTAGCAATTGGAGACGACGTTAGCAATGGTTTGGGTTGAATgtaggtacctttgtactcttatggcacggtttccttgatgatctatctcatagtactcctgcatttcccatgcctttggcagttgtttgcgaaacatagg...
species | Physcomitrella patens |
transcript | PP1S62_200V6.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAGAACACTCTAGCAATTGGAGACGACGTTAGCAATGGTTTGGGTTGAAT GAAGGTCGCTAGGTGATGAGTAGGGGCAGCTCAACTTCAAAATGAAGTGAAEST: gi|208396961|gb|DC924643.1|DC924643
genomic: GAGAACACTCTAGCAATTGGAGACGACGTTAGCAATGGTTTGGGTTGAATgtaggtacct ... cacctgacagGAAGGTCGCTAGGTGATGAGTAGGGGCAGCTCAACTTCAAAATGAAGTGAA
EST: GAGAACACTCTAGCAATTGGAGACGACGTTAGCAATGGTTTGGGTTGAAT G----TCGCTAGGTGATGAGTAGGGGCAGCTCAACTTCAAAATGAAGTGAAEST: gi|208353222|gb|DC921882.1|DC921882
genomic: GAGAACACTCTAGCAATTGGAGACGACGTTAGCAATGGTTTGGGTTGAATgtaggtacct ... cacctgacagGAAGGTCGCTAGGTGATGAGTAGGGGCAGCTCAACTTCAAAATGAAGTGAA
EST: GAGAACACTCTAGCAATTGGAGACGACGTTAGCAATGGTTTGGGTTGAAT GAAGGTCGCTAGGTGATGAGTAGGGGCAGCTCAACTTCAAAATGAAGTGAAEST: gi|208365536|gb|DC954777.1|DC954777
genomic: GAGAACACTCTAGCAATTGGAGACGACGTTAGCAATGGTTTGGGTTGAATgtaggtacct ... cacctgacagGAAGGTCGCTAGGTGATGAGTAGGGGCAGCTCAACTTCAAAATGAAGTGAA
EST: GAGAACACTCTAGCAATTGGAGACGACGTTAGCAATGGTTTGGGTTGAAT GAAGGTCGCTAGGTGATGAGTAGGGGCAGCTCAACTTCAAAATGAAGTGAAEST: gi|18336341|gb|BJ168363.1|BJ168363
genomic: GAGAACACTCTAGCAATTGGAGACGACGTTAGCAATGGTTTGGGTTGAATgtaggtacct ... cacctgacagGAAGGTCGCTAGGTGATGAGTAGGGGCAGCTCAACTTCAAAATGAAGTGAA
EST: GAGAACACTCTAGCAATTGGAGACGACGTTAGCAATGGTTTGGGTTGAAT GAAGGTCGCTAGGTGATGAGTAGGGGCAGCTCAACTTCAAAATGAAGTGAA
genomic: GAGAACACTCTAGCAATTGGAGACGACGTTAGCAATGGTTTGGGTTGAATgtaggtacct ... cacctgacagGAAGGTCGCTAGGTGATGAGTAGGGGCAGCTCAACTTCAAAATGAAGTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTTTTGTTTTGAGTGTTAAGACTCGAGAGCAACGTTTGTTGGGAGAACACTCTAGCAATTGGAGACGACGTTAGCAATGGTTTGGGTTGAATgtaggtacctttgtactcttatggcacggtttccttgatgatctatctcatagtactcctgcatttcccatgcctttggcagttgtttgcgaaacatagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA