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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGAGGCAGAGAAGCAAGCTGTTCAGAGAGCCTACAAATTTCAGAAGCCTTGTGTGCCTCCATCGGAACCTAGAAGTTCAGCAACCTCCGACTCTCCTGgtatgtgcactgtatgcatcccctaaacatttgcttgcagatttgggatgaaacatttgactgtcactttgagcatgagcatcgatccaacacaaattta...

Basic information

species Physcomitrella patens
transcript PP1S62_181V6.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162244847|gb|FC424658.1|FC424658
EST:     TTGTGTGCCTCCATCGGAACCTAGAAGTTCAGCAACCTCCGACTCTCCTG                         TTGCTGAAACGGATTCTAAGCAGTTAAGTGGTACAAAACTTGAGCATTTCG
genomic: TTGTGTGCCTCCATCGGAACCTAGAAGTTCAGCAACCTCCGACTCTCCTGgtatgtgcac ... cctattgcagTTGCTGAAACGGATTCTAAGCAGTTAAGTGGTACAAAACTTGAGCATTTCG
EST: gi|37839547|gb|BJ597555.1|BJ597555
EST:     TTGTGTGCCTCCATCGGAACCTAGAAGTTCAGCAACCTCCGACTCTCCTG                         TTGCTGAAACGGATTCTAAGCAGTTAAGTGGTACAAAACTTGAGCATTTCG
genomic: TTGTGTGCCTCCATCGGAACCTAGAAGTTCAGCAACCTCCGACTCTCCTGgtatgtgcac ... cctattgcagTTGCTGAAACGGATTCTAAGCAGTTAAGTGGTACAAAACTTGAGCATTTCG
EST: gi|208382310|gb|DC919298.1|DC919298
EST:     TTGTGTGCCTCCATCGGAACCTAGAAGTTCAGCAACCTCCGACTCTCCTG                         TTGCTGAAACGGATTCTAAGCAGTTAAGTGGTACAAAACTTGAGCATTTCG
genomic: TTGTGTGCCTCCATCGGAACCTAGAAGTTCAGCAACCTCCGACTCTCCTGgtatgtgcac ... cctattgcagTTGCTGAAACGGATTCTAAGCAGTTAAGTGGTACAAAACTTGAGCATTTCG
EST: gi|162196571|gb|FC374861.1|FC374861
EST:     TTGTGTGCCTCCATCGGAACCTAGAAGTTCAGCAACCTCCGACTCTCCTG                         TTGCTGAAACGGATTCTAAGCAGTTAAGTGGTACAAAACTTGAGCATTTCG
genomic: TTGTGTGCCTCCATCGGAACCTAGAAGTTCAGCAACCTCCGACTCTCCTGgtatgtgcac ... cctattgcagTTGCTGAAACGGATTCTAAGCAGTTAAGTGGTACAAAACTTGAGCATTTCG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGGAGGCAGAGAAGCAAGCTGTTCAGAGAGCCTACAAATTTCAGAAGCCTTGTGTGCCTCCATCGGAACCTAGAAGTTCAGCAACCTCCGACTCTCCTGgtatgtgcactgtatgcatcccctaaacatttgcttgcagatttgggatgaaacatttgactgtcactttgagcatgagcatcgatccaacacaaattta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacacaaa