Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGCCCTCGATGTAAAGGAAGCGGATTTAATTCAGGGAATCACTTTTGGAACTGGAATCAGTCCTCTCCATCCACTGAATCGTGTTGGTTTTGTGAAGGgtatgtgtttcagtgacgcacagttttgcaacttcttcctagagttcaagaaccttgcacagtctttggttttacttgaaaaaccttgttttattcactt...

Basic information

species Physcomitrella patens
transcript PP1S62_181V6.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162196572|gb|FC374862.1|FC374862
EST:     AACTGGAATCAGTCCTCTCCATCCACTGAATCGTGTTGGTTTTGTGAAGG                         GGTTGGCATGATGCCCGTGATAGGTTTGAACGGCTTCATGTTTGGACGGTC
genomic: AACTGGAATCAGTCCTCTCCATCCACTGAATCGTGTTGGTTTTGTGAAGGgtatgtgttt ... tctgtggcagGGTTGGCATGATGCCCGTGATAGGTTTGAACGGCTTCATGTTTGGACGGTC
EST: gi|100403566|gb|BY954990.1|BY954990
EST:     AACTGGAATCAGTCCTCTCCATCCACTGAATCGTGTTGGTTTTGTGAAGG                         GGTTGGCATGATGCCCGTGATAGGTTTGAACGGCTTCATGTTTGGACGGTC
genomic: AACTGGAATCAGTCCTCTCCATCCACTGAATCGTGTTGGTTTTGTGAAGGgtatgtgttt ... tctgtggcagGGTTGGCATGATGCCCGTGATAGGTTTGAACGGCTTCATGTTTGGACGGTC