1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaaacctgggaaatttatatgaggcctgcatcagtcttatatgcctgtgcattgacaaagtgattgtgtgactttggtggcccgaatctacctattgcagTTGCTGAAACGGATTCTAAGCAGTTAAGTGGTACAAAACTTGAGCATTTCGGTAACTTTTCTCTGGGGAGCAAGGAAGCTGTCAACAGTCAAAACCCATG
species | Physcomitrella patens |
transcript | PP1S62_181V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTGTGTGCCTCCATCGGAACCTAGAAGTTCAGCAACCTCCGACTCTCCTG TTGCTGAAACGGATTCTAAGCAGTTAAGTGGTACAAAACTTGAGCATTTCGEST: gi|37839547|gb|BJ597555.1|BJ597555
genomic: TTGTGTGCCTCCATCGGAACCTAGAAGTTCAGCAACCTCCGACTCTCCTGgtatgtgcac ... cctattgcagTTGCTGAAACGGATTCTAAGCAGTTAAGTGGTACAAAACTTGAGCATTTCG
EST: TTGTGTGCCTCCATCGGAACCTAGAAGTTCAGCAACCTCCGACTCTCCTG TTGCTGAAACGGATTCTAAGCAGTTAAGTGGTACAAAACTTGAGCATTTCGEST: gi|208382310|gb|DC919298.1|DC919298
genomic: TTGTGTGCCTCCATCGGAACCTAGAAGTTCAGCAACCTCCGACTCTCCTGgtatgtgcac ... cctattgcagTTGCTGAAACGGATTCTAAGCAGTTAAGTGGTACAAAACTTGAGCATTTCG
EST: TTGTGTGCCTCCATCGGAACCTAGAAGTTCAGCAACCTCCGACTCTCCTG TTGCTGAAACGGATTCTAAGCAGTTAAGTGGTACAAAACTTGAGCATTTCGEST: gi|162196571|gb|FC374861.1|FC374861
genomic: TTGTGTGCCTCCATCGGAACCTAGAAGTTCAGCAACCTCCGACTCTCCTGgtatgtgcac ... cctattgcagTTGCTGAAACGGATTCTAAGCAGTTAAGTGGTACAAAACTTGAGCATTTCG
EST: TTGTGTGCCTCCATCGGAACCTAGAAGTTCAGCAACCTCCGACTCTCCTG TTGCTGAAACGGATTCTAAGCAGTTAAGTGGTACAAAACTTGAGCATTTCG
genomic: TTGTGTGCCTCCATCGGAACCTAGAAGTTCAGCAACCTCCGACTCTCCTGgtatgtgcac ... cctattgcagTTGCTGAAACGGATTCTAAGCAGTTAAGTGGTACAAAACTTGAGCATTTCG
tgtgcattgacaaagtgattgtgtgactttggtggcccgaatctacctattgcagTTGCTGAAACGGATTCTAAGCAGTTAAGTGGTACAAAACTTGAGCATTTCGGTAACTTTTCTCTGGGGAGCAAGGAAGCTGTCAACAGTCAAAACCCATG
cattgac putative branch site (score: 3)
tctacct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaacctgggaaatttatatgaggcctgcatcagtcttatatgcctgtgcattgacaaagtgattgtgtgactttggtggcccgaatctacctattgcagTTGCTGAAACGGATTCTAAGCAGTTAAGTGGTACAAAACTTGAGCATTTCGGTAACTTTTCTCTGGGGAGCAAGGAAGCTGTCAACAGTCAAAACCCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG