1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtacgtgttaaatcagccccttaaatctttgctttcatgaaaccaaggaattcttcaagagtgtcaaagctcgccgagatttctgcttgttttaccggaattggattgctttgctgacattctacaagttttagggcgtagggtttatgggatttagtaacccaggaagaggtttttttgttcgcagATTTGGAATTTTTCCATCTTGGGGTTTATCTCAGAGGTTGCAACGCGCTATAGGGCCTTACAGAGCACGGGAAGTCTCCTTAACAGCTACAGCGTTAGAT
species | Physcomitrella patens |
transcript | PP1S62_178V6.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATATTTTGGTGGCTAGCACTGCCGCCAAATTCATTGACACGCATGCCAA ATTTGGAATTTTTCCATCTTGGGGTTTATCTCAGAGGTTGCAACGCGCTATEST: gi|162257573|gb|FC433707.1|FC433707
genomic: GATATTTTGGTGGCTAGCACTGCCGCCAAATTCATTGACACGCATGCCAAgtacgtgtta ... ttgttcgcagATTTGGAATTTTTCCATCTTGGGGTTTATCTCAGAGGTTGCAACGCGCTAT
EST: GATATTTTGGTGGCTAGCACTGCCGCCAAATTCATTGACACGCATGCCAA ATTTGGAATTTTTCCATCTTGGGGTTTATCTCAGAGGTTGCAACGCGCTATEST: gi|162267394|gb|FC443937.1|FC443937
genomic: GATATTTTGGTGGCTAGCACTGCCGCCAAATTCATTGACACGCATGCCAAgtacgtgtta ... ttgttcgcagATTTGGAATTTTTCCATCTTGGGGTTTATCTCAGAGGTTGCAACGCGCTAT
EST: GATATTTTGGTGGCTAGCACTGCCGCCAAATTCATTGACACGCATGCCAA ATTTGGAATTTTTCCATCTTGGGGTTTATCTCAGAGGTTGCAACGCGCTATEST: gi|162262355|gb|FC437682.1|FC437682
genomic: GATATTTTGGTGGCTAGCACTGCCGCCAAATTCATTGACACGCATGCCAAgtacgtgtta ... ttgttcgcagATTTGGAATTTTTCCATCTTGGGGTTTATCTCAGAGGTTGCAACGCGCTAT
EST: GATATTTTGGTGGCTAGCACTGCCGCCAAATTCATTGACACGCATGCCAA ATTTGGAATTTTTCCATCTTGGGGTTTATCTCAGAGGTTGCAACGCGCTATEST: gi|162257574|gb|FC433708.1|FC433708
genomic: GATATTTTGGTGGCTAGCACTGCCGCCAAATTCATTGACACGCATGCCAAgtacgtgtta ... ttgttcgcagATTTGGAATTTTTCCATCTTGGGGTTTATCTCAGAGGTTGCAACGCGCTAT
EST: GATATTTTGGTGGCTAGCACTGCCGCCAAATTCATTGACACGCATGCCAA ATTTGGAATTTTTCCATCTTGGGGTTTATCTCAGAGGTTGCAACGCGCTATEST: gi|37844478|gb|BJ602486.1|BJ602486
genomic: GATATTTTGGTGGCTAGCACTGCCGCCAAATTCATTGACACGCATGCCAAgtacgtgtta ... ttgttcgcagATTTGGAATTTTTCCATCTTGGGGTTTATCTCAGAGGTTGCAACGCGCTAT
EST: GATATTTTGGTGGCTAGCACTGCCGCCAAATTCATTGACACGCATGCCAA ATTTGGAATTTTTCCATCTTGGGGTTTATCTCAGAGGTTGCAACGCGCTATEST: gi|162267393|gb|FC443936.1|FC443936
genomic: GATATTTTGGTGGCTAGCACTGCCGCCAAATTCATTGACACGCATGCCAAgtacgtgtta ... ttgttcgcagATTTGGAATTTTTCCATCTTGGGGTTTATCTCAGAGGTTGCAACGCGCTAT
EST: GATATTTTGGTGGCTAGCACCGCCGCCAAATTCATTGACACGCATGCCAA ATTTGGAATTTTTCCATCTTGGGGTTTATCTCAGAGGTTGCAACGCGCTATEST: gi|162262356|gb|FC437683.1|FC437683
genomic: GATATTTTGGTGGCTAGCACTGCCGCCAAATTCATTGACACGCATGCCAAgtacgtgtta ... ttgttcgcagATTTGGAATTTTTCCATCTTGGGGTTTATCTCAGAGGTTGCAACGCGCTAT
EST: GATATTTTGGTGGCTAGCACTGCCGCCAAATTCATTGACACGCATGCCAA ATTTGGAATTTTTCCATCTTGGGGTTTATCTCAGAGGTTGCAACGCGCTATEST: gi|18368248|gb|BJ200333.1|BJ200333
genomic: GATATTTTGGTGGCTAGCACTGCCGCCAAATTCATTGACACGCATGCCAAgtacgtgtta ... ttgttcgcagATTTGGAATTTTTCCATCTTGGGGTTTATCTCAGAGGTTGCAACGCGCTAT
EST: GATATTTTGGTGGCTAGCACTGCCGCCAAATTCATTGACACGCATGCCAA ATTTGGAATTTTTCCATCTTGGGGTTTATCTCAGAGGTTGCAACGCGCTATEST: gi|37834764|gb|BJ592776.1|BJ592776
genomic: GATATTTTGGTGGCTAGCACTGCCGCCAAATTCATTGACACGCATGCCAAgtacgtgtta ... ttgttcgcagATTTGGAATTTTTCCATCTTGGGGTTTATCTCAGAGGTTGCAACGCGCTAT
EST: GATATTTTGGTGGCTAGCACTGCCGCCAAATTCATTGACACGCATGCCAA ATTTGGAATTTTTCCATCTTGGGGTTTATCTCAGAGGTTGCAACGCGCTAT
genomic: GATATTTTGGTGGCTAGCACTGCCGCCAAATTCATTGACACGCATGCCAAgtacgtgtta ... ttgttcgcagATTTGGAATTTTTCCATCTTGGGGTTTATCTCAGAGGTTGCAACGCGCTAT
agggcgtagggtttatgggatttagtaacccaggaagaggtttttttgttcgcagATTTGGAATTTTTCCATCTTGGGGTTTATCTCAGAGGTTGCAACGCGCTATAGGGCCTTACAGAGCACGGGAAGTCTCCTTAACAGCTACAGCGTTAGAT
tagtaac putative branch site (score: 5)
tttttttgttc putative PPT
tttttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtgttaaatcagccccttaaatctttgctttcatgaaaccaaggaattcttcaagagtgtcaaagctcgccgagatttctgcttgttttaccggaattggattgctttgctgacattctacaagttttagggcgtagggtttatgggatttagtaacccaggaagaggtttttttgttcgcagATTTGGAATTTTTCCATCTTGGGGTTTATCTCAGAGGTTGCAACGCGCTATAGGGCCTTACAGAGCACGGGAAGTCTCCTTAACAGCTACAGCGTTAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA