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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaatcacttcacttctaagttgtgttaccatgttaagtgaagaattcgagacttagaatgtgtggaacagactggaattctcagcattgaaaattttcagGGTTCGCAGGGACATTTCATCATGGCGAATGAGAAAGAGAAGCTAATCTTGGTTGACAAAACCAGAAATGGAATTGCAACTATTACTATTAACAGGCCAC

Basic information

species Physcomitrella patens
transcript PP1S62_178V6.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18351280|gb|BJ183332.1|BJ183332
EST:     CCTTTGCTGGCATTCGTCTTGTTGGGTCCTCGACAGGCAACGTTTTTCAA                         GGTTCGCAGGGACATTTCATCATGGCGAATGAGAAAGAGAAGCTAATCTTG
genomic: CCTTTGCTGGCATTCGTCTTGTTGGGTCCTCGACAGGCAACGTTTTTCAAgtgagtttgg ... aaattttcagGGTTCGCAGGGACATTTCATCATGGCGAATGAGAAAGAGAAGCTAATCTTG
EST: gi|162267394|gb|FC443937.1|FC443937
EST:     TCTTGTTGGGTCCTCGACAGGCAACGTCTTTTCAA                         GGTTCGCAGGGACATTTCATCATGGCGAATGAGAAAGAGAAGCTAATCTT
genomic: TCTTGTTGGGTCCTCGACAGGCAACGT-TTTTCAAgtgagtttgg ... aaattttcagGGTTCGCAGGGACATTTCATCATGGCGAATGAGAAAGAGAAGCTAATCTT
EST: gi|18354969|gb|BJ187028.1|BJ187028
EST:     CCTTTGCTGGCATTCGTCTTGTTGGGTCCTCGACAGGCAACGTTTTTCAA                         GGTTCGCAGGGACATTTCATCATGGCGAATGAGAAAGAGAAGCTAATCTTG
genomic: CCTTTGCTGGCATTCGTCTTGTTGGGTCCTCGACAGGCAACGTTTTTCAAgtgagtttgg ... aaattttcagGGTTCGCAGGGACATTTCATCATGGCGAATGAGAAAGAGAAGCTAATCTTG
EST: gi|18368075|gb|BJ200160.1|BJ200160
EST:     CCTTTGCTGGCATTCGTCTTGTTGGGTCCTCGACAGGCAACGTTTTTCAA                         GGTTCGCAGGGACATTTCATCATGGCGAATGAGAAAGAGAAGCTAATCTTG
genomic: CCTTTGCTGGCATTCGTCTTGTTGGGTCCTCGACAGGCAACGTTTTTCAAgtgagtttgg ... aaattttcagGGTTCGCAGGGACATTTCATCATGGCGAATGAGAAAGAGAAGCTAATCTTG
EST: gi|162262356|gb|FC437683.1|FC437683
EST:     CGACAGGCAACGTTTTTCAA                         GGTTCGCAGGGACATTTCATCATGGCGAATGAGAAAGAGAAGCTAATCTTG
genomic: CGACAGGCAACGTTTTTCAAgtgagtttgg ... aaattttcagGGTTCGCAGGGACATTTCATCATGGCGAATGAGAAAGAGAAGCTAATCTTG
EST: gi|18368248|gb|BJ200333.1|BJ200333
EST:     GCTGGCATTCGTCTTGTTGGGTCCTCGACAGGCAACGTTTTTCAA                         GGTTCGCAGGGACATTTCATCATGGCGAATGAGAAAGAGAAGCTAATCTTG
genomic: GCTGGCATTCGTCTTGTTGGGTCCTCGACAGGCAACGTTTTTCAAgtgagtttgg ... aaattttcagGGTTCGCAGGGACATTTCATCATGGCGAATGAGAAAGAGAAGCTAATCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgagacttagaatgtgtggaacagactggaattctcagcattgaaaattttcagGGTTCGCAGGGACATTTCATCATGGCGAATGAGAAAGAGAAGCTAATCTTGGTTGACAAAACCAGAAATGGAATTGCAACTATTACTATTAACAGGCCAC
                                                ttttc  CT-rich tract
                                        attgaaaattttca  TA-rich tract